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BaseInfo

ncRNA ID novel_bna_miR1189
Species Brassica napus
Class miRNA
Genome position ChrA3:36260144-36260329 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 1 - AUAUGGAGUGAGGUUGGAGAUGCC - 24
Stem-loop(if miRNA) --          A                  C            AUA                  A                C      - UA
  CAUCUCCAAC UCACUCCAUAUUUUACUC AAAAUUGAGAAA   GAGUGGGAAAUGGAGUGA GAACAAAAAAUAAAAG AUUACU C  U
  |||||||||| |||||||||||||||||| ||||||||||||   |||||||||||||||||| |||||||||||||||| |||||| |  A
  GUAGAGGUUG AGUGAGGUAUAAAAUGAG UUUUAACUCUUU   CUCAUCCUUUACCUCAUU CUUGUUUUUUAUUUUC UAAUGA G  A
CC          G                  A            GAC                  A                C      A UA
Stem-loop sequence CAUCUCCAACAUCACUCCAUAUUUUACUCCAAAAUUGAGAAAAUAGAGUGGGAAAUGGAGUGAAGAACAAAAAAUAAAAGCAUUACUCUAUAAAUGAAGUAAUCCUUUUAUUUUUUGUUCAUUACUCCAUUUCCUACUCCAGUUUCUCAAUUUUAGAGUAAAAUAUGGAGUGAGGUUGGAGAUGCC