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BaseInfo

ncRNA ID novel_bna_miR1183
Species Brassica napus
Class miRNA
Genome position ChrA10:18087022-18087085 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 1 - AGAGAGAGAGUCCGACUCGAUGGU - 24
Stem-loop(if miRNA) --      --A             UAACUCUCU
  UAUCGA   GGGCUCUCUCUCU         C
  ||||||   |||||||||||||
  GUAGCU   CCUGAGAGAGAGA         U
UG      CAG             CUUUCUAUG
Stem-loop sequence UAUCGAAGGGCUCUCUCUCUUAACUCUCUCUGUAUCUUUCAGAGAGAGAGUCCGACUCGAUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013809636.1
ncRNA:24   UGGUAGCUCAGCCUGAGAGAGAGA   1
  =|||*|||*|||||*|||||||||
targets:93   GCCAGCGAUUCGGAAUCUCUCUCU   116

2.5 PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase ARI7 (LOC106369488), mRNA probable E3 ubiquitin-protein ligase ARI7(LOC106369488) coding protein psRNATarget
XM_013811193.1
ncRNA:24   UGGUAGCUCAGCCUGAGAGAGAGA   1
  =|||*|||*|||||*|||||||||
targets:86   GCCAGCGAUUCGGAAUCUCUCUCU   109

2.5 PREDICTED: Brassica napus probable E3 ubiquitin-protein ligase ARI5 (LOC106371155), mRNA probable E3 ubiquitin-protein ligase ARI5(LOC106371155) coding protein psRNATarget