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BaseInfo

ncRNA ID novel_bna_miR1182
Species Brassica napus
Class miRNA
Genome position ChrC9:1750212-1750297 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 23
Mature sequence(if miRNA) 1 - GGAUCGAAUCUGGAUCUCGGAUA - 23
Stem-loop(if miRNA) --    -             -  --UC     AUA         UC
  UCCG GAUCCGGAUUCGG CC    UCUGG   UCCGGAUUU  G
  |||| ||||||||||||| ||    |||||   |||||||||  G
  AGGC CUAGGUCUAAGCU GG    AGGCC   AGGCCUAGG  A
AU    U             A  CACU     ---         CU
Stem-loop sequence UCCGGAUCCGGAUUCGGCCUCUCUGGAUAUCCGGAUUUUCGGAUCGGAUCCGGACCGGAUCACGGAUCGAAUCUGGAUCUCGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013838949.1
ncRNA:23   AUAGGCUCUAGGUCUAAGCUAGG   1
  *|||=||*||||||||||||||*
targets:478   GAUCUGACAUCCAGAUUCGAUCA   500

3.0 PREDICTED: Brassica napus uncharacterized LOC106398383 (LOC106398383), mRNA uncharacterized LOC106398383(LOC106398383) coding protein psRNATarget