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BaseInfo

ncRNA ID novel_bna_miR1180
Species Brassica napus
Class miRNA
Genome position ChrA2:9337075-9337141 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 44 - AGAAGACUCUUGGAAGACUCUCAG - 67
Stem-loop(if miRNA) --        C          C  A    AA   U
  AGAAGACU UUGGAAGACU UC GAAG  UCU G
  |||||||| |||||||||| || ||||  |||
  UCUUCUGA AGCUUUCUGA AG CUUC  AGA G
CG        -          A  A    --   A
Stem-loop sequence AGAAGACUCUUGGAAGACUCUCAGAAGAAUCUUGGAAGACUUCAGAAAGUCUUUCGAAGUCUUCUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013830034.1
ncRNA:24   GACUCUCAGAAGGUUCUCAGAAGA   1
  *|||-|||=||||||||||*||||
targets:1651   AUGA-AGUUUUCCAAGAGUGUUCU   1673

2.5 PREDICTED: Brassica napus callose synthase 9-like (LOC106389707), mRNA callose synthase 9-like(LOC106389707) coding protein psRNATarget