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BaseInfo

ncRNA ID novel_bna_miR1179
Species Brassica napus
Class miRNA
Genome position ChrA2:9916472-9916538 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 44 - AACUAAAAAAAGCUAAGAACCGGU - 67
Stem-loop(if miRNA) --        AA         C     C   AAU
  AACUAAAA  AGCUAAGAA CGGUU UUA   A
  ||||||||  ||||||||| ||||| |||   A
  UUGAUUUU  UCGAUUCUU GCCAA AAU   G
AA        --         A     A   AUA
Stem-loop sequence AACUAAAAAAAGCUAAGAACCGGUUCUUAAAUAAGAUAUAAAAACCGAUUCUUAGCUUUUUAGUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013811649.1
ncRNA:24   UGGCCAAGA-AUCGAAAAAAAUCAA   1
  *|=*|||||-|||||||||||||||
targets:1477   UCUUGUUCUGUAGCUUUUUUUAGUU   1501

2.0 PREDICTED: Brassica napus uncharacterized LOC106371567 (LOC106371567), mRNA uncharacterized LOC106371567(LOC106371567) coding protein psRNATarget