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BaseInfo

ncRNA ID novel_bna_miR1178
Species Brassica napus
Class miRNA
Genome position ChrC5:33586638-33586696 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 36 - GAAGUGAAGAAGAAGAAGAACGUG - 59
Stem-loop(if miRNA) ---GAA                 C  GAGA
      GUGAAGAAGAAGAAGAA GU    G
      ||||||||||||||||| ||
      UAUUUUUUUUUUUUUUU UA    A
CUUUAA                 U  AGAG
Stem-loop sequence GAAGUGAAGAAGAAGAAGAACGUGAGAGAGAGAAUUUUUUUUUUUUUUUUUAUAAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013844591.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  =|=-||||||||||||||||||||
targets:120   UAU-UUCUUCUUCUUCUUCACUUC   142

0.0 PREDICTED: Brassica napus glutathione S-transferase T3-like (LOC106403805), mRNA glutathione S-transferase T3-like(LOC106403805) coding protein psRNATarget
XM_013786942.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  |||**||||||||||||||||||=
targets:9   CACAAUCUUCUUCUUCUUCACUUU   32

1.0 PREDICTED: Brassica napus NAC domain-containing protein 62-like (LOC106347418), mRNA NAC domain-containing protein 62-like(LOC106347418) coding protein psRNATarget
XM_013858976.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  |*=*|||||||||||||||||||=
targets:31   CUUCUUCUUCUUCUUCUUCACUUU   54

1.0 PREDICTED: Brassica napus NAC domain-containing protein 62-like (LOC106418302), mRNA NAC domain-containing protein 62-like(LOC106418302) coding protein psRNATarget
XM_013859393.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  |*=*|||||||||||||||||||=
targets:28   CUUCUUCUUCUUCUUCUUCACUUU   51

1.0 PREDICTED: Brassica napus NAC domain-containing protein 62-like (LOC106418649), mRNA NAC domain-containing protein 62-like(LOC106418649) coding protein psRNATarget
XM_013819997.1
ncRNA:24   GUGC-AAGAAGAAGAAGAAGUGAAG   1
  ||*|-|||||||||||=||||||||
targets:474   CAAGAUUCUUCUUCUUUUUCACUUC   498

1.5 PREDICTED: Brassica napus protein MIZU-KUSSEI 1-like (LOC106380188), mRNA protein MIZU-KUSSEI 1-like(LOC106380188) coding protein psRNATarget
XM_013811657.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  ||=*|||||||||||||||*||||
targets:8   CAUCUUCUUCUUCUUCUUCUCUUC   31

1.5 PREDICTED: Brassica napus protein RTF2 homolog (LOC106371574), mRNA protein RTF2 homolog(LOC106371574) coding protein psRNATarget
XM_013796518.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  |||--||||||||||||||=||||
targets:26   CAC--UCUUCUUCUUCUUCGCUUC   47

1.5 PREDICTED: Brassica napus fasciclin-like arabinogalactan protein 14 (LOC106356789), mRNA fasciclin-like arabinogalactan protein 14(LOC106356789) coding protein psRNATarget
XM_013836863.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  =***|||||||||||||||=||||
targets:13   UUGUUUCUUCUUCUUCUUCGCUUC   36

1.5 PREDICTED: Brassica napus citrate synthase 2, peroxisomal-like (LOC106396466), mRNA citrate synthase 2, peroxisomal-like(LOC106396466) coding protein psRNATarget
XM_013846575.1
ncRNA:24   GUGC------AAGAAGAAGAAGAAGUGAAG   1
  =|||------|||||||||||||||*||||
targets:119   UACGCAAAUCUUCUUCUUCUUCUUCUCUUC   148

1.5 PREDICTED: Brassica napus prolyl endopeptidase-like (LOC106406001), mRNA prolyl endopeptidase-like(LOC106406001) coding protein psRNATarget
XM_013786157.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  *|*|*||||*|||||||||||||=
targets:102   GAGGCUCUUGUUCUUCUUCACUUU   125

2.0 PREDICTED: Brassica napus ACT domain-containing protein ACR11 (LOC106346740), mRNA ACT domain-containing protein ACR11(LOC106346740) coding protein psRNATarget
XM_013828255.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  ===|*|=||||||||||||||||=
targets:655   UGUGAUUUUCUUCUUCUUCACUUU   678

2.0 PREDICTED: Brassica napus autophagy-related protein 8e-like (LOC106388224), mRNA autophagy-related protein 8e-like(LOC106388224) coding protein psRNATarget
XM_013855830.1
ncRNA:24   GUGC------AAGAAGAAGAAGAAGUGAAG   1
  ||||------|||*|||||||||||||||*
targets:2159   CACGAGCUGCUUCAUCUUCUUCUUCACUUG   2188

2.0 PREDICTED: Brassica napus probable ADP-ribosylation factor GTPase-activating protein AGD14 (LOC106415192), mRNA probable ADP-ribosylation factor GTPase-activating protein AGD14(LOC106415192) coding protein psRNATarget
XM_013841548.1
ncRNA:24   GUGC------AAGAAGAAGAAGAAGUGAAG   1
  ||||------|||*|||||||||||||||*
targets:2157   CACGAGCUGCUUCAUCUUCUUCUUCACUUG   2186

2.0 PREDICTED: Brassica napus probable ADP-ribosylation factor GTPase-activating protein AGD14 (LOC106401108), mRNA probable ADP-ribosylation factor GTPase-activating protein AGD14(LOC106401108) coding protein psRNATarget
XM_013786122.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  *==||||||||||||||||*|||=
targets:85   GGUGUUCUUCUUCUUCUUCUCUUU   108

2.5 PREDICTED: Brassica napus BEL1-like homeodomain protein 3 (LOC106346707), transcript variant X1, mRNA BEL1-like homeodomain protein 3(LOC106346707) coding protein psRNATarget
XM_013786130.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGUGAAG   1
  *==||||||||||||||||*|||=
targets:85   GGUGUUCUUCUUCUUCUUCUCUUU   108

2.5 PREDICTED: Brassica napus BEL1-like homeodomain protein 3 (LOC106346707), transcript variant X2, mRNA BEL1-like homeodomain protein 3(LOC106346707) coding protein psRNATarget
XM_013787740.1
ncRNA:24   GUG-C-AAGAAGAAGAAGAAGUGAAG   1
  |||-|-||||||||||||||||*||=
targets:374   CACAGCUUCUUCUUCUUCUUCAGUUU   399

2.5 PREDICTED: Brassica napus protein trichome birefringence-like 14 (LOC106348085), mRNA protein trichome birefringence-like 14(LOC106348085) coding protein psRNATarget
XM_013787589.1
ncRNA:24   GUG-C-AAGAAGAAGAAGAAGUGAAG   1
  |||-|-||||||||||||||||*||=
targets:373   CACAGCUUCUUCUUCUUCUUCAGUUU   398

2.5 PREDICTED: Brassica napus protein trichome birefringence-like 14 (LOC106347955), mRNA protein trichome birefringence-like 14(LOC106347955) coding protein psRNATarget
XM_013838346.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGU-GAAG   1
  ||=*||||||||||||||||-||||
targets:1586   CAUCUUCUUCUUCUUCUUCAUCUUC   1610

3.0 PREDICTED: Brassica napus SNF2 domain-containing protein CLASSY 3-like (LOC106397725), mRNA SNF2 domain-containing protein CLASSY 3-like(LOC106397725) coding protein psRNATarget
XM_013811332.1
ncRNA:24   GUGCAAGAAGAAGAAGAAG-UGAAG   1
  ||=*|||||||||||||||-|||||
targets:419   CAUCUUCUUCUUCUUCUUCUACUUC   443

3.0 PREDICTED: Brassica napus TBC1 domain family member 15-like (LOC106371284), transcript variant X1, mRNA TBC1 domain family member 15-like(LOC106371284) coding protein psRNATarget
XM_013811333.1
ncRNA:24   GUGCAAGAAGAAGAAGAAG-UGAAG   1
  ||=*|||||||||||||||-|||||
targets:419   CAUCUUCUUCUUCUUCUUCUACUUC   443

3.0 PREDICTED: Brassica napus TBC1 domain family member 15-like (LOC106371284), transcript variant X2, mRNA TBC1 domain family member 15-like(LOC106371284) coding protein psRNATarget
XM_013859270.1
ncRNA:24   GUGCA---AGAAGAAGAAGAAGUGAAG   1
  *==||---|||||||||||||||||||
targets:66   AGUGUGAGUCUUCUUCUUCUUCACUUC   92

3.0 PREDICTED: Brassica napus uncharacterized LOC106418515 (LOC106418515), mRNA uncharacterized LOC106418515(LOC106418515) coding protein psRNATarget
XM_013787136.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGU-GAAG   1
  =|=*||||||||||||||||-||||
targets:125   UAUCUUCUUCUUCUUCUUCAUCUUC   149

3.0 PREDICTED: Brassica napus alpha-glucan phosphorylase 2, cytosolic-like (LOC106347565), transcript variant X2, mRNA alpha-glucan phosphorylase 2, cytosolic-like(LOC106347565) coding protein psRNATarget
XM_013818712.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGU-GAAG   1
  |==*||||||||||||||||-||||
targets:334   CGUAUUCUUCUUCUUCUUCAUCUUC   358

3.0 PREDICTED: Brassica napus ethylene-responsive transcription factor ERF098-like (LOC106378606), mRNA ethylene-responsive transcription factor ERF098-like(LOC106378606) coding protein psRNATarget
XM_013876031.1
ncRNA:24   GUGC--------AAGAAGAAGAAGAAGUGA-AG   1
  ||=|--------||||||||||||||||||-||
targets:234   CAUGAACCUUUCUUCUUCUUCUUCUUCACUCUC   266

3.0 PREDICTED: Brassica napus sulfoquinovosyl transferase SQD2-like (LOC106435170), mRNA sulfoquinovosyl transferase SQD2-like(LOC106435170) coding protein psRNATarget
XM_013854468.1
ncRNA:24   GUGCAAGAAGAAGAAGAAGU-GAAG   1
  =*|*||||||||||||||||-||||
targets:1094   UUCCUUCUUCUUCUUCUUCAUCUUC   1118

3.0 PREDICTED: Brassica napus uncharacterized LOC106413724 (LOC106413724), mRNA uncharacterized LOC106413724(LOC106413724) coding protein psRNATarget
XM_013867641.1
ncRNA:24   GUGCAAGAAGAAGAAGAAG-UGAAG   1
  **|*|||||||||||||||-|||||
targets:834   GUCCUUCUUCUUCUUCUUCUACUUC   858

3.0 PREDICTED: Brassica napus calmodulin-binding protein 25-like (LOC106426909), transcript variant X2, mRNA calmodulin-binding protein 25-like(LOC106426909) coding protein psRNATarget
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