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BaseInfo

ncRNA ID novel_bna_miR1171
Species Brassica napus
Class miRNA
Genome position ChrA1:23452483-23452561 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 23
Mature sequence(if miRNA) 1 - UUAGAGUAGAAAAUAGAGUGAUA - 23
Stem-loop(if miRNA) --                               -----   U
  UCACUCUAUUUUUUACUCUAAAAUAGAGUAU     GAG U
  |||||||||||||||||||||||||||||||     |||
  AGUGAGAUAAAAGAUGAGAUUUUAUCUCAUG     CUC U
AU                               GUAAC   G
Stem-loop sequence UCACUCUAUUUUUUACUCUAAAAUAGAGUAUGAGUUUGCUCCAAUGGUACUCUAUUUUAGAGUAGAAAAUAGAGUGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013841080.1
ncRNA:23   AUAGUGAGAUAAAAGAUGAGAUU   1
  |=*=||||||||||||||||||*
targets:1731   UGGUACUCUAUUUUCUACUCUAC   1753

1.0 PREDICTED: Brassica napus phosphoinositide phosphatase SAC1-like (LOC106400708), mRNA phosphoinositide phosphatase SAC1-like(LOC106400708) coding protein psRNATarget