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BaseInfo

ncRNA ID novel_bna_miR1170
Species Brassica napus
Class miRNA
Genome position ChrC4:55843645-55843798 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 131 - AGGAUUUAUUCAAGGGUUUAGGGU - 154
Stem-loop(if miRNA) --          A                      C    U        A       -----    AAU     AG    
  CCUAAACUCU GGAUAAAUCUUAAACUCUAAAU AAAA CACUAAAC CUAAAAC     ACUC   GGUUU  GGUUU
  |||||||||| |||||||||||||||||||||| |||| |||||||| |||||||     ||||   |||||  ||||A
  GGAUUUGGGA CUUAUUUAGGAUUUGAGAUUUA UUUU GUGAUUUG GAUUUUG     UGGG   UUAGG  UUAGG
UG          A                      U    -        G       AGAUU    -AU     AU    
Stem-loop sequence CCUAAACUCUAGGAUAAAUCUUAAACUCUAAAUCAAAAUCACUAAACACUAAAACACUCAAUGGUUUAGGGUUUAGGAUUUAGGAUUUAGGGUUUAGAGUUUUAGGGUUUAGUGUUUUUAUUUAGAGUUUAGGAUUUAUUCAAGGGUUUAGGGU