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BaseInfo

ncRNA ID novel_bna_miR1150
Species Brassica napus
Class miRNA
Genome position ChrC4:55809724-55809817 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 71 - AGAGUGGAGUUCUUAGCGGAAGUU - 94
Stem-loop(if miRNA) --                                  ----      ACU
  AGAGUGGAGUUCUUAGCGGAAGUUAAGAAACUGU    UUCUUA   U
  ||||||||||||||||||||||||||||||||||    ||||||
  UCUCACCUCAAGAAUCGCCUUCAGUUCUUUGACA    AAGAAU   C
AA                                  CCCC      CGC
Stem-loop sequence AGAGUGGAGUUCUUAGCGGAAGUUAAGAAACUGUUUCUUAACUUCCGCUAAGAACCCCACAGUUUCUUGACUUCCGCUAAGAACUCCACUCUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013811713.1
ncRNA:24   UUGAAGGCGAUUCUUGAGGUGAGA   1
  *==**||||||||*||||||||||
targets:536   CGUCGCCGCUAAGUACUCCACUCU   559

1.5 PREDICTED: Brassica napus homeobox protein knotted-1-like 5 (LOC106371604), mRNA homeobox protein knotted-1-like 5(LOC106371604) coding protein psRNATarget