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BaseInfo

ncRNA ID novel_bna_miR1143
Species Brassica napus
Class miRNA
Genome position ChrC3:13174173-13174309 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 23
Mature sequence(if miRNA) 1 - UAGGAUUUAGUGUUUAGGGUUUA - 23
Stem-loop(if miRNA) UAGGAUUUAGUGU     G      G      G      G      G      G      G      G     
             UUAGG UUUAAG UUUAGG UUUAGA UUUAGG UUUAGA UUUAGG UUUAGG UUUAGG
             ||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||| |||||G
             GAUUU GGAUUU AGAUUU GGAUUU GGAUUU GGAUUU GGAUUU GGAUUU AGAUUU
------------G     G      G      G      G      G      G      G      G     
Stem-loop sequence UAGGAUUUAGUGUUUAGGGUUUAAGGUUUAGGGUUUAGAGUUUAGGGUUUAGAGUUUAGGGUUUAGGGUUUAGGGUUUAGAGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGGGUUUAGAGUUUAGGGUUUAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013819934.1
ncRNA:23   AUUUGGGAUUUGUGAUUUAGGAU   1
  **||||||||||*|||||||||*
targets:67   ACAACCCUAAACUCUAAAUCCUC   89

2.5 PREDICTED: Brassica napus ethylene-responsive transcription factor ERF114-like (LOC106380120), mRNA ethylene-responsive transcription factor ERF114-like(LOC106380120) coding protein psRNATarget