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BaseInfo

ncRNA ID novel_bna_miR1136
Species Brassica napus
Class miRNA
Genome position ChrC2:37117701-37117786 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 23
Mature sequence(if miRNA) 64 - GGAUCGAAUCUGGAUCUCGGAUA - 86
Stem-loop(if miRNA) --    -             -  UC     AUAUCCGGAUUUUC
  UCCG GAUCCGGAUUCGG CC  UCCGG              G
  |||| ||||||||||||| ||  |||||              G
  AGGC CUAGGUCUAAGCU GG  UCUAG              A
AU    U             A  -C     GCUAGGCCUAGGCU
Stem-loop sequence UCCGGAUCCGGAUUCGGCCUCUCCGGAUAUCCGGAUUUUCGGAUCGGAUCCGGAUCGGAUCUCGGAUCGAAUCUGGAUCUCGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013838949.1
ncRNA:23   AUAGGCUCUAGGUCUAAGCUAGG   1
  *|||=||*||||||||||||||*
targets:478   GAUCUGACAUCCAGAUUCGAUCA   500

3.0 PREDICTED: Brassica napus uncharacterized LOC106398383 (LOC106398383), mRNA uncharacterized LOC106398383(LOC106398383) coding protein psRNATarget