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BaseInfo

ncRNA ID novel_bna_miR1135
Species Brassica napus
Class miRNA
Genome position ChrC2:36961249-36961336 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 65 - GGAUCGAAUCCAGAUCUCGGAUAA - 88
Stem-loop(if miRNA) --     -    C        -  UC    - AUAUCCGGAUUUU
  AUCCG GAUC GGAUUCGG CC  UCCG G             C
  ||||| |||| |||||||| ||  |||| |             G
  UAGGC CUAG CCUAAGCU GG  CUAG C             G
AA     U    A        A  CA    G UAGGCCUAGGCUA
Stem-loop sequence AUCCGGAUCCGGAUUCGGCCUCUCCGGAUAUCCGGAUUUUCGGAUCGGAUCCGGAUCGGAUCACGGAUCGAAUCCAGAUCUCGGAUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013870893.1
ncRNA:24   AAUAGGCUCUAGACCUAAGCUAGG   1
  |*||=|**|||||||||||||||=
targets:205   UGAUUCUUGAUCUGGAUUCGAUCU   228

3.0 PREDICTED: Brassica napus protein transport protein SEC23-like (LOC106430118), mRNA protein transport protein SEC23-like(LOC106430118) coding protein psRNATarget
XM_013867370.1
ncRNA:24   AAUAGGCUCUAGACCUAAGCUAGG   1
  |*||=|**|||||||||||||||=
targets:215   UGAUUCUUGAUCUGGAUUCGAUCU   238

3.0 PREDICTED: Brassica napus protein transport protein SEC23-like (LOC106426653), mRNA protein transport protein SEC23-like(LOC106426653) coding protein psRNATarget