ncRNA ID | novel_bna_miR1135 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC2:36961249-36961336 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR1363496 |
Length | 24 |
Mature sequence(if miRNA) | 65 - GGAUCGAAUCCAGAUCUCGGAUAA - 88 |
Stem-loop(if miRNA) |
--     -    C        -  UC    - AUAUCCGGAUUUU   AUCCG GAUC GGAUUCGG CC  UCCG G             C   ||||| |||| |||||||| ||  |||| |             G   UAGGC CUAG CCUAAGCU GG  CUAG C             G AA     U    A        A  CA    G UAGGCCUAGGCUA |
Stem-loop sequence | AUCCGGAUCCGGAUUCGGCCUCUCCGGAUAUCCGGAUUUUCGGAUCGGAUCCGGAUCGGAUCACGGAUCGAAUCCAGAUCUCGGAUAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013870893.1 |
|
3.0 | PREDICTED: Brassica napus protein transport protein SEC23-like (LOC106430118), mRNA | protein transport protein SEC23-like(LOC106430118) | coding protein | psRNATarget | |||||||||
XM_013867370.1 |
|
3.0 | PREDICTED: Brassica napus protein transport protein SEC23-like (LOC106426653), mRNA | protein transport protein SEC23-like(LOC106426653) | coding protein | psRNATarget |