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BaseInfo

ncRNA ID novel_bna_miR1127
Species Brassica napus
Class miRNA
Genome position ChrC1:25977381-25977599 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 196 - AAGGAUUAUGAUUUAGGGUUUAGU - 219
Stem-loop(if miRNA) --                    C        UG --G     C                      A       UAA               -    -    UAAACCCUAA
  UAAACUCUAAAUCAUAAUCC UAAACUCU  G   UAAAC CUAAACCUUUGGAUAAAUCAUA ACUCUAA   AAAAACACUAAACAC GAAA ACUC          A
  |||||||||||||||||||| ||||||||  |   ||||| |||||||||||||||||||||| |||||||   ||||||||||||||| |||| ||||          C
  AUUUGGGAUUUAGUAUUAGG AUUUGGGA  U   AUUUG GAUUUGGGAACCUAUUUAGUAU UGAGAUU   UUUUUGUGAUUUGUG UUUU UGAG          C
UG                    A        UU AGG     A                      G       UAG               A    A    UUUCCAAAUG
Stem-loop sequence UAAACUCUAAAUCAUAAUCCCUAAACUCUUGGGUAAACCCUAAACCUUUGGAUAAAUCAUAAACUCUAAUAAAAAAACACUAAACACGAAAACUCUAAACCCUAAACCGUAAACCUUUGAGUAUUUUAGUGUUUAGUGUUUUUGAUUUAGAGUGUAUGAUUUAUCCAAGGGUUUAGAGUUUAGGAUUUAGGGUUUAAGGAUUAUGAUUUAGGGUUUAGU