Search result

BaseInfo

ncRNA ID	novel_bna_miR1118
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:18662443-18662533 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363496
Length	24
Mature sequence(if miRNA)	68 - AGGAAUAAUAUGGAAUGAGAUGGA - 91
Stem-loop(if miRNA)	--     -        A        AGAAUGGAU           UGU   CAUUU GUUCCAUA UUAUUUUU         UUUCAAAAGAA   U   ||||| |||||||| ||||||||         |||||||||||   G   GUAGA UAAGGUAU AAUAAGGA         AAGGUUUUUUU   A AG     G        -        ----AAGGU           UAU
Stem-loop sequence	CAUUUGUUCCAUAAUUAUUUUUAGAAUGGAUUUUCAAAAGAAUGUUGAUAUUUUUUUUGGAAUGGAAAGGAAUAAUAUGGAAUGAGAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013877771.1	ncRNA:24   AGGUAGAGUAAGGUAUAAUAAGGA   1   *|=*|||||*|||||||||||=|| targets:1034   ACUUUCUCAAUCCAUAUUAUUUCU   1057 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106436825 (LOC106436825), mRNA	uncharacterized LOC106436825(LOC106436825)	coding protein	psRNATarget
XM_013818353.1	ncRNA:24   AGGUAGAGUAAGGUAUAAUAAGGA   1   *|=*|||||*|||||||||||=|| targets:1034   ACUUUCUCAAUCCAUAUUAUUUCU   1057 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106378183 (LOC106378183), mRNA	uncharacterized LOC106378183(LOC106378183)	coding protein	psRNATarget
XM_013839416.1	ncRNA:24   AGGUAGAGUAAGGUAUAAUAAGGA   1   *|=*|||||*|||||||||||=|| targets:893   ACUUUCUCAAUCCAUAUUAUUUCU   916 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106398918 (LOC106398918), mRNA	uncharacterized LOC106398918(LOC106398918)	coding protein	psRNATarget
XM_013869662.1	ncRNA:24   AGGUAGAGUAAGGUAUAAUAAGGA   1   *|=*|||||*|||||||||||=|| targets:239   ACUUUCUCAAUCCAUAUUAUUUCU   262 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106428913 (LOC106428913), mRNA	uncharacterized LOC106428913(LOC106428913)	coding protein	psRNATarget