Search result

BaseInfo

ncRNA ID ath-miRf10657-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 25
Mature sequence(if miRNA) NA - GUUACUCGACCUGGUGGUCGAGUGG - NA
Stem-loop(if miRNA)      -    --U          GG           AUGG    A
GAGCU GAGG   UACUCGACCU  UGGUCGAGUGG    GAAG A
||||| ||||   ||||||||||  |||||||||||    |||| U
CUUGG CUUC   AUGAGCUGGG  ACCAGCUCACU    CUUC A
     U    UGU          GG           GAAA    G
Stem-loop sequence GAGCUGAGGUUACUCGACCUGGUGGUCGAGUGGAUGGGAAGAAUAGCUUCAAAGUCACUCGACCAGGGGGUCGAGUAUGUCUUCUGGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT025674.1
ncRNA:25   GGUGAGCUGGUGGUCCAGCUCAUUG   1
  |=||||||||*||||||||||||||
targets:187   CUACUCGACCCCCAGGUCGAGUAAC   211

1.0 Arabidopsis thaliana NA coding protein psRNATarget
EF183194.1
ncRNA:25   GGUGAGCUGGUGGUCCAGCUCAUUG   1
  |||||||||||||||||||||||=*
targets:449   CCACUCGACCACCAGGUCGAGUAGA   473

2.5 Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:25   GGUGAGCUGGUGGUCCAGCUCAUUG   1
  *=||||||||*|||||||||||=||
targets:136   AUACUCGACCCCCAGGUCGAGUGAC   160

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:25   GGUGAGCUGGUGGUCCAGCUCAUUG   1
  *=||||||||*|||||||||||=||
targets:136   AUACUCGACCCCCAGGUCGAGUGAC   160

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
EF183005.1
ncRNA:25   GGUGAGCUGGUGGUCCAGCUCAUUG   1
  *==*||||*=|=|||||||||||||
targets:809   AUGGUCGAGUAUCAGGUCGAGUAAC   833

3.0 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget