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BaseInfo

ncRNA ID novel_bna_miR1109
Species Brassica napus
Class miRNA
Genome position ChrA8:10148128-10148246 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 96 - AGGGGAAAAUAUAGAGAUUUGCUA - 119
Stem-loop(if miRNA) --UUUU                   -        A                 GGAUU   UC
      AUCUCUAUAUUUUCCUCUA AAAUAGAG AACUCUAUUAUAGAGGU     UGC  C
      ||||||||||||||||||| |||||||| |||||||||||||||||     |||
      UAGAGAUAUAAAAGGGGAU UUUAUCUC UUGAGAUAAUAUCUCCG     AUG  A
AUCGUU                   A        C                 ----U   UA
Stem-loop sequence UUUUAUCUCUAUAUUUUCCUCUAAAAUAGAGAAACUCUAUUAUAGAGGUGGAUUUGCUCCAAUGUAUGCCUCUAUAAUAGAGUUCCUCUAUUUAUAGGGGAAAAUAUAGAGAUUUGCUA