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BaseInfo

ncRNA ID novel_bna_miR1104
Species Brassica napus
Class miRNA
Genome position ChrC8:35869919-35869996 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 1 - GAGGAUUUCAUUUUCUGUCGGAAU - 24
Stem-loop(if miRNA) --         UU    -UU             G    UA
  UCCGACGGA  GAUG   UCCUCGGAAUUUC UCGG  U
  |||||||||  ||||   ||||||||||||| ||||
  AGGCUGUCU  UUAC   AGGAGCCUUAAAG AGCC  A
UA         -U    UUU             G    UU
Stem-loop sequence UCCGACGGAUUGAUGUUUCCUCGGAAUUUCGUCGGUAUAUUCCGAGGAAAUUCCGAGGAUUUCAUUUUCUGUCGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013795208.1
ncRNA:24   UAAGGCUGUCUUUUACUUUAGGAG   1
  ||||=||||||||||||=|||||=
targets:848   AUUCUGACAGAAAAUGAGAUCCUU   871

2.5 PREDICTED: Brassica napus PYK10-binding protein 1-like (LOC106355223), mRNA PYK10-binding protein 1-like(LOC106355223) coding protein psRNATarget