ncRNA ID | novel_bna_miR1101 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA7:2908668-2908834 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR1363496 |
Length | 24 |
Mature sequence(if miRNA) | 144 - UGACUUUCAAGUAAGUCGUCUGGG - 167 |
Stem-loop(if miRNA) |
--             C        -   A   A      U   UUG          AG         -AAUC U     -    U   CAGACGACUUACU GGAAGUCG CCA GUA GACGAC UAC   AAAGUCGUCC  GAUAAGCAA     G CCAGA UUUA U   ||||||||||||| |||||||| ||| ||| |||||| |||   ||||||||||  |||||||||     | ||||| |||| U   GUCUGCUGAAUGA CUUUCAGU GGU CAU CUGCUG AUG   UUUCAGCAGG  CUAUUCGUU     C GGUCU AGAU C GG             A        A   C   -      C   CUA          CU         CCAAA U     U    C |
Stem-loop sequence | CAGACGACUUACUCGGAAGUCGCCAAGUAAGACGACUUACUUGAAAGUCGUCCAGGAUAAGCAAAAUCGUCCAGAUUUAUUUCCUAGAUUCUGGUCAAACCUUGCUUAUCUCGGACGACUUUAUCGUACGUCGUCUACCUGGAUGACUUUCAAGUAAGUCGUCUGGG |