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BaseInfo

ncRNA ID novel_bna_miR1098
Species Brassica napus
Class miRNA
Genome position ChrA1:526487-526606 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 21
Mature sequence(if miRNA) 1 - UUAAAAUUUAGGGUAUAGGAU - 21
Stem-loop(if miRNA) --      G G       A GG AUAU            U G      A     G     
  CUUGUA U UGGGUUU G  U    AAUUUGGGUUUA G UCUAGG UUAGG UUUAUG
  |||||| | ||||||| |  |    |||||||||||| | |||||| ||||| |||||G
  GGAUAU G AUUUAAA U  G    UUGGAUUUAGGU U GGAUUU AGUUU GGAUAU
UA      G G       A UU -GAU            U G      G     G     
Stem-loop sequence CUUGUAGUGUGGGUUUAGGGUAUAUAAUUUGGGUUUAUGGUCUAGGAUUAGGGUUUAUGGUAUAGGGUUUGAGUUUAGGGUUUGGAUUUAGGUUUAGGUUUAAAAUUUAGGGUAUAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013839014.1
ncRNA:21   UAGGAUAUGGGAUUUAAAAUU   1
  =||||||||||||||||*|||
targets:835   GUCCUAUACCCUAAAUUCUAA   855

1.5 PREDICTED: Brassica napus uncharacterized LOC106398466 (LOC106398466), mRNA uncharacterized LOC106398466(LOC106398466) coding protein psRNATarget