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BaseInfo

ncRNA ID	novel_bna_miR1096
Species	Brassica napus
Class	miRNA
Genome position	ChrA7:14087251-14087420 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363496;SRR2015555
Length	23
Mature sequence(if miRNA)	148 - GAGUGUGAUUGGAGAUGGUCUUA - 170
Stem-loop(if miRNA)	--   G         AG         ----UUU  C       A     A   AA                       U  -AU      AGA CAUCUCCAA  GCACUCUAU       UU CUCUAUA UUUAC CUA  AUAGAGUAACUCUAUUAUAGAGU AA   UUGC   ||| |||||||||  |||||||||       || ||||||| ||||| |||  ||||||||||||||||||||||| ||   |||U   UCU GUAGAGGUU  UGUGAGAUA       AA GAGAUAU AAGUG GAU  UAUCUCAUUGAGAUAAUAUCUCA UU   AACC AU   G         AG         UUAUCCU  U       A     A   AA                       C  GGU
Stem-loop sequence	AGAGCAUCUCCAAAGGCACUCUAUUUUUUCCUCUAUAAUUUACACUAAAAUAGAGUAACUCUAUUAUAGAGUUAAAUUUGCUCCAAUGGUUCACUCUAUAAUAGAGUUACUCUAUAAUAGAGUGAAAUAUAGAGUAAUCCUAUUAUAGAGUGUGAUUGGAGAUGGUCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013787807.1	ncRNA:23   AUUCUGGUAGAGGUUAGUGUGAG   1   *||-||||*|||||||||||||= targets:3239   GAA-ACCAACUCCAAUCACACUU   3260 Target Full Sequence	2.0	PREDICTED: Brassica napus DNA mismatch repair protein MLH3 (LOC106348139), transcript variant X2, mRNA	DNA mismatch repair protein MLH3(LOC106348139)	coding protein	psRNATarget
XM_013787806.1	ncRNA:23   AUUCUGGUAGAGGUUAGUGUGAG   1   *||-||||*|||||||||||||= targets:3245   GAA-ACCAACUCCAAUCACACUU   3266 Target Full Sequence	2.0	PREDICTED: Brassica napus DNA mismatch repair protein MLH3 (LOC106348139), transcript variant X1, mRNA	DNA mismatch repair protein MLH3(LOC106348139)	coding protein	psRNATarget
XM_013820032.1	ncRNA:23   AUUCUGGUAGAGGUUAGUGUGAG   1   |*||||*||||||||*||||||| targets:1150   UCAGACAAUCUCCAAGCACACUC   1172 Target Full Sequence	2.5	PREDICTED: Brassica napus dynamin-related protein 4C-like (LOC106380224), mRNA	dynamin-related protein 4C-like(LOC106380224)	coding protein	psRNATarget