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BaseInfo

ncRNA ID novel_bna_miR1095
Species Brassica napus
Class miRNA
Genome position ChrA1:10602154-10602264 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 1 - GAACUGAACCGUUCGGGUUGGAAA - 24
Stem-loop(if miRNA) --           U          AAAAU  C   UG  --A        AU    U
  GAACUGAACCG UCGGGUUGGA     CU AAC  AA   GAUUUGAA  GGAC U
  ||||||||||| ||||||||||     || |||  ||   ||||||||  ||||
  CUUGGCUUGGC AGCUUAGCUU     GA UUG  UU   CUAAGCUU  UUUG U
GG           U          -GGCU  C   GU  UGG        GG    G
Stem-loop sequence GAACUGAACCGUUCGGGUUGGAAAAAUCUCAACUGAAAGAUUUGAAAUGGACUUUGGUUUGGUUCGAAUCGGUUUUGGUUCAGUCGGUUCGAUUCGAUCGGUUCGGUUCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013786036.1
ncRNA:24   AAAGGUUGGGCUUGCCAAGUCAAG   1
  ***|=||*|||||||||||||*||
targets:1519   GGGCUAAACCGAACGGUUCAGCUC   1542

2.5 PREDICTED: Brassica napus cyclin-A2-3-like (LOC106346648), mRNA cyclin-A2-3-like(LOC106346648) coding protein psRNATarget
XM_013891681.1
ncRNA:24   AAAGGUUGGGCUUGCCAAGUCAAG   1
  ****|||=|=*|||||||||||||
targets:1402   GGAACAAUCUCAACGGUUCAGUUC   1425

3.0 PREDICTED: Brassica napus probable leucine-rich repeat receptor-like protein kinase At2g28990 (LOC106450030), mRNA probable leucine-rich repeat receptor-like protein kinase At2g28990(LOC106450030) coding protein psRNATarget