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BaseInfo

ncRNA ID novel_bna_miR1090
Species Brassica napus
Class miRNA
Genome position ChrA7:7967674-7967862 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 166 - AGGGUUUAGUGUUUUGCUGACGGC - 189
Stem-loop(if miRNA) -  - UG AU    C            U           AAAUC   AACACUAGACCCUAAACCCUAAACUUUUGAAUAAAUCAUAACCCUAAAU
 CC U  G  AAAC CUAAACCCUAAA CACUUAACCUU     CUA                                                 C
 || |  |  |||| |||||||||||| |||||||||||     |||                                                 A
 GG A  C  UUUG GAUUUGGGAUUU GUGAAUUGGAA     UGG                                                 U
C  C GU GU    U            -           ---AU   AAUUUGAGAUUUGGAAACCUAUUUAGUAUUUAGGAUCACAAAUCACAUA
Stem-loop sequence CCUUGGAUAAACCCUAAACCCUAAAUCACUUAACCUUAAAUCCUAAACACUAGACCCUAAACCCUAAACUUUUGAAUAAAUCAUAACCCUAAAUCAUAUACACUAAACACUAGGAUUUAUGAUUUAUCCAAAGGUUUAGAGUUUAAGGUUAAAGGUUAAGUGUUUAGGGUUUAGUGUUUUGCUGACGGC