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BaseInfo

ncRNA ID novel_bna_miR1086
Species Brassica napus
Class miRNA
Genome position ChrA6:41286057-41286109 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 30 - AUAUGUGUAUGUAGUUGUGGGAUC - 53
Stem-loop(if miRNA) ------UUGUA                U
           UAUAUAUAUAUAUAUA A
           |||||||||||||||| U
           AUGUAUGUGUAUAUAU A
CUAGGGUGUUG                U
Stem-loop sequence UUGUAUAUAUAUAUAUAUAUAUAUAUUAUAUAUGUGUAUGUAGUUGUGGGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013814564.1
ncRNA:24   CUAGGGUGUUGAUGUAUGUGU-AUA   1
  **|*=||||||||||||||||-|||
targets:887   UUUGUCACAACUACAUACACAAUAU   911

3.0 PREDICTED: Brassica napus putative glycine-rich cell wall structural protein 1 (LOC106374568), mRNA putative glycine-rich cell wall structural protein 1(LOC106374568) coding protein psRNATarget
XM_013798792.1
ncRNA:24   CUAGGGUGUUGAUGUAUGUGU-AUA   1
  **|*=||||||||||||||||-|||
targets:759   UUUGUCACAACUACAUACACAAUAU   783

3.0 PREDICTED: Brassica napus keratin, type II cytoskeletal 1-like (LOC106359027), mRNA keratin, type II cytoskeletal 1-like(LOC106359027) coding protein psRNATarget