ncRNA ID | novel_bna_miR1082 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrC8:3091541-3091620 [+] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR1363495 |
Length | 21 |
Mature sequence(if miRNA) | 60 - AGACUUCGUAGAAGACUUCCU - 80 |
Stem-loop(if miRNA) |
--              U       U       CA     C   GAAGUCUUCUACGA GUCUUAC CUCUGGA  ACUUA A   |||||||||||||| ||||||| |||||||  |||||   CUUCAGAAGAUGCU CAGAAUG GAGACCU  UGAAU U UC              U       U       AC     G |
Stem-loop sequence | GAAGUCUUCUACGAUGUCUUACUCUCUGGACAACUUACAUGUAAGUCAUCCAGAGUGUAAGACUUCGUAGAAGACUUCCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013832972.1 |
|
2.5 | PREDICTED: Brassica napus BTB/POZ domain-containing protein At1g55760 (LOC106392180), mRNA | BTB/POZ domain-containing protein At1g55760(LOC106392180) | coding protein | psRNATarget | |||||||||
XM_013793946.1 |
|
2.5 | PREDICTED: Brassica napus BTB/POZ domain-containing protein At1g55760-like (LOC106354091), mRNA | BTB/POZ domain-containing protein At1g55760-like(LOC106354091) | coding protein | psRNATarget |