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BaseInfo

ncRNA ID novel_bna_miR1079
Species Brassica napus
Class miRNA
Genome position ChrA5:1885639-1885716 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 1 - UUGUUAUUGUUAACUGCGGGGCGG - 24
Stem-loop(if miRNA) --   U    ---       U       -A G    A    
  GCC CUGC   UAACAGU AUAAAAA  U UAUA AUAUA
  ||| ||||   ||||||| |||||||  | |||| ||||U
  CGG GGCG   AUUGUUA UGUUUUU  A AUGU UAUGA
GG   -    UCA       U       AG G    A    
Stem-loop sequence GCCUCUGCUAACAGUUAUAAAAAAUGUAUAAAUAUAUAGUAUAUGUAGAGAUUUUUGUUAUUGUUAACUGCGGGGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013872974.1
ncRNA:24   GGCGGGGCGUCAAUUGUUAUUGUU   1
  *****|||*||||||=||||||||
targets:148   GAAAGCCGAAGUUAAUAAUAACAA   171

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase SINAT2-like (LOC106432129), transcript variant X4, mRNA E3 ubiquitin-protein ligase SINAT2-like(LOC106432129) coding protein psRNATarget
XM_013872973.1
ncRNA:24   GGCGGGGCGUCAAUUGUUAUUGUU   1
  *****|||*||||||=||||||||
targets:216   GAAAGCCGAAGUUAAUAAUAACAA   239

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase SINAT2-like (LOC106432129), transcript variant X3, mRNA E3 ubiquitin-protein ligase SINAT2-like(LOC106432129) coding protein psRNATarget
XM_013872972.1
ncRNA:24   GGCGGGGCGUCAAUUGUUAUUGUU   1
  *****|||*||||||=||||||||
targets:292   GAAAGCCGAAGUUAAUAAUAACAA   315

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase SINAT2-like (LOC106432129), transcript variant X2, mRNA E3 ubiquitin-protein ligase SINAT2-like(LOC106432129) coding protein psRNATarget
XM_013872971.1
ncRNA:24   GGCGGGGCGUCAAUUGUUAUUGUU   1
  *****|||*||||||=||||||||
targets:334   GAAAGCCGAAGUUAAUAAUAACAA   357

2.5 PREDICTED: Brassica napus E3 ubiquitin-protein ligase SINAT2-like (LOC106432129), transcript variant X1, mRNA E3 ubiquitin-protein ligase SINAT2-like(LOC106432129) coding protein psRNATarget
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