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BaseInfo

ncRNA ID ath-miRf10653-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 20
Mature sequence(if miRNA) NA - UCGCAAAAGUUGCGAGGGAU - NA
Stem-loop(if miRNA)    -       A                AAU  AUAUUUCUAUAGCAAACCUGCGA
UCC UCGCAAA GUUGCGAGGGAUUUGC   GA                       G
||| ||||||| ||||||||||||||||   ||
AGG AGCGUUU UAACGCUCCCUAAACG   GA                       G
   U       G                -AU  UGCUAGCGACCUUGAACGUUGAG
Stem-loop sequence UCCUCGCAAAAGUUGCGAGGGAUUUGCAAUGAAUAUUUCUAUAGCAAACCUGCGAGGGAGUUGCAAGUUCCAGCGAUCGUAGUAGCAAAUCCCUCGCAAUGUUUGCGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT003734.1
ncRNA:20   UAGGGAGCGUUGAAAACGCU   1
  ||||||=|||||||||||*|
targets:40   AUCCCUUGCAACUUUUGCAA   59

2.5 Arabidopsis thaliana At2g26580 mRNA, complete cds NA coding protein psRNATarget
AK119091.1
ncRNA:20   UAGGGAGCGUUGAAAACGCU   1
  ||||||=|||||||||||*|
targets:80   AUCCCUUGCAACUUUUGCAA   99

2.5 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19 NA coding protein psRNATarget
NM_179750.3
ncRNA:20   UAGGGAGCGUUGAAAACGCU   1
  ||||||=|||||||||||*|
targets:154   AUCCCUUGCAACUUUUGCAA   173

2.5 Arabidopsis thaliana plant-specific transcription factor YABBY family protein (YAB5), mRNA plant-specific transcription factor YABBY family protein(YAB5) coding protein psRNATarget
NM_179749.3
ncRNA:20   UAGGGAGCGUUGAAAACGCU   1
  ||||||=|||||||||||*|
targets:311   AUCCCUUGCAACUUUUGCAA   330

2.5 Arabidopsis thaliana plant-specific transcription factor YABBY family protein (YAB5), mRNA plant-specific transcription factor YABBY family protein(YAB5) coding protein psRNATarget