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BaseInfo

ncRNA ID novel_bna_miR1069
Species Brassica napus
Class miRNA
Genome position ChrA4:20692273-20692438 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 1 - AGAGGCAUACAUUGGAGCAAAUCU - 24
Stem-loop(if miRNA) --                                          -                  AAUCAUAC            U
  AUUUGCUCCAAUGUAUGCCUCUAUAAUAGAGUUUCUCUAUUU UAGAGGAAAAUAUAGAGG        UUUUUAUCUCUA A
  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||        ||||||||||||
  UAAACGAGGUUACAUACGGAGAUAUUAUCUCAAGGAGAUAAA AUCUCCUUUUAUAUUUCU        AAAAGUAGAGAU U
UC                                          U                  -AAACAAU            U
Stem-loop sequence AUUUGCUCCAAUGUAUGCCUCUAUAAUAGAGUUUCUCUAUUUUAGAGGAAAAUAUAGAGGAAUCAUACUUUUUAUCUCUAUAUUUAGAGAUGAAAAUAACAAAUCUUUAUAUUUUCCUCUAUAAAUAGAGGAACUCUAUUAUAGAGGCAUACAUUGGAGCAAAUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013891634.1
ncRNA:24   UCUA--AACGAGGUUACAUACGGAGA   1
  |||*--|||*|||||*||||||||||
targets:833   AGAAGCUUGGUCCAAAGUAUGCCUCU   858

2.5 PREDICTED: Brassica napus fatty-acid-binding protein 2-like (LOC106449977), mRNA fatty-acid-binding protein 2-like(LOC106449977) coding protein psRNATarget