Search result

BaseInfo

ncRNA ID novel_bna_miR1060
Species Brassica napus
Class miRNA
Genome position ChrA4:8528986-8529086 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 78 - AGAGUAGAAAAUAGAGUGAUGAAU - 101
Stem-loop(if miRNA) --GGC                              ACU    AAUC    UUG
     UUACUCUAUUUUUUACUUUAAAAUAGAGUA   CUAU    GAGU   A
     ||||||||||||||||||||||||||||||   ||||    ||||
     AGUGAGAUAAAAGAUGAGAUUUUAUCUCAU   GGUA    CUCG   G
UAAGU                              ---    --AC    UUU
Stem-loop sequence GGCUUACUCUAUUUUUUACUUUAAAAUAGAGUAACUCUAUAAUCGAGUUUGAGUUUGCUCCAAUGGUACUCUAUUUUAGAGUAGAAAAUAGAGUGAUGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013823854.1
ncRNA:24   UA---AGUAGUG-AGAUAAAAGAUGAGA   1
  ||---||*||||-||||||||||||||*
targets:177   AUGCCUCUUCACGUCUAUUUUCUACUCG   204

3.0 PREDICTED: Brassica napus protein PNS1-like (LOC106383796), mRNA protein PNS1-like(LOC106383796) coding protein psRNATarget