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BaseInfo

ncRNA ID novel_bna_miR1057
Species Brassica napus
Class miRNA
Genome position ChrA10:6705247-6705341 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 21
Mature sequence(if miRNA) 1 - UUAAAAUUUAGGGUAUAGGAU - 21
Stem-loop(if miRNA) ---------------UAUAU    UG        -A      A    GA    G
                    AAUU  GGUUUAGG  UCUAGG UUAG  UUUA G
                    ||||  ||||||||  |||||| ||||  |||| A
                    UUAG  UUAAGUUU  AGAUUU AGUC  GGAU U
UAGGAUAUGGGAUUUAAAAU    GU        AG      G    UG    A
Stem-loop sequence UAUAUAAUUUGGGUUUAGGAUCUAGGAUUAGGAUUUAGGAUAUAGGGUCUGAGUUUAGAGAUUUGAAUUUGGAUUUAAAAUUUAGGGUAUAGGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013839014.1
ncRNA:21   UAGGAUAUGGGAUUUAAAAUU   1
  =||||||||||||||||*|||
targets:835   GUCCUAUACCCUAAAUUCUAA   855

1.5 PREDICTED: Brassica napus uncharacterized LOC106398466 (LOC106398466), mRNA uncharacterized LOC106398466(LOC106398466) coding protein psRNATarget