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BaseInfo

ncRNA ID novel_bna_miR1051
Species Brassica napus
Class miRNA
Genome position ChrA3:35196007-35196091 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496;SRR1363495
Length 23
Mature sequence(if miRNA) 63 - CAUUCAGAUGGAUCAUCCGGAUA - 85
Stem-loop(if miRNA) --      C  G             AA  AG       UU   U
  UCUGGA GA CCAUCUGGAUGAA  UG  AUUUUUG  UGU U
  |||||| || |||||||||||||  ||  |||||||  |||
  AGGCCU CU GGUAGACUUACUU  AC  UGAAAAU  ACA A
AU      A  A             -A  -G       -C   G
Stem-loop sequence UCUGGACGAGCCAUCUGGAUGAAAAUGAGAUUUUUGUUUGUUUAGACACUAAAAGUGCAAUUCAUUCAGAUGGAUCAUCCGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013849767.1
ncRNA:23   AUAGGCCUACUAGGUAGACUUAC   1
  *||||*||||||||||||||=||
targets:1247   CAUCCAGAUGAUCCAUCUGAGUG   1269

2.5 PREDICTED: Brassica napus uncharacterized LOC106409084 (LOC106409084), mRNA uncharacterized LOC106409084(LOC106409084) coding protein psRNATarget