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BaseInfo

ncRNA ID	novel_bna_miR1048
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:14483382-14483499 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363496;SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AGCUUCGGAUAAGAGACGGUUCUU - 24
Stem-loop(if miRNA)	--AGC     A                -       --     CUUUUUUA      -    AA      UUCGG UAAGAGACGGUUCUUA AUUUUUU  UUAAG        GAUUUU AACU  A      ||||| |||||||||||||||| |||||||  |||||        |||||| ||||      AAGUC AUUCUCUGCCGAGAAU UAAAGAA  AAUUC        CUAAAA UUGA  A GUAAA     G                A       UA     ----UCUG      A    AA
Stem-loop sequence	AGCUUCGGAUAAGAGACGGUUCUUAAUUUUUUUUAAGCUUUUUUAGAUUUUAACUAAAAAAAGUUAAAAAUCGUCUCUUAAAUAAGAAAUAUAAGAGCCGUCUCUUAGCUGAAAAAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013823936.1	ncRNA:24   UUCUUGGCAGAGAAUAGGCUUCGA   1   ||**=||||*||||=||||||||| targets:301   AAAUGCCGUGUCUUGUCCGAAGCU   324 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like (LOC106383884), mRNA	pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like(LOC106383884)	coding protein	psRNATarget
XM_013823937.1	ncRNA:24   UUCUUGGCAGAGAAUAGGCUUCGA   1   ||**=||||*||||=||||||||| targets:1116   AAAUGCCGUGUCUUGUCCGAAGCU   1139 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like (LOC106383885), mRNA	pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like(LOC106383885)	coding protein	psRNATarget
XM_013809901.1	ncRNA:24   UUCUUGGCAGAGAAUAGGCUUCGA   1   ||**=||||*||||=||||||||| targets:1263   AAAUGCCGUGUCUUGUCCGAAGCU   1286 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like (LOC106369789), mRNA	pentatricopeptide repeat-containing protein At5g19020, mitochondrial-like(LOC106369789)	coding protein	psRNATarget