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BaseInfo

ncRNA ID novel_bna_miR1040
Species Brassica napus
Class miRNA
Genome position ChrC9:15695669-15695778 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 87 - AUCUAUUUUGUGAUUUGUUGAACA - 110
Stem-loop(if miRNA) --  UG  --   U          A   UUUUCAU      A  --   UUUUU      A
  UU  AU  GUU CAAAAUAGAU AUG       AUAUUA UG  UAC     CAGUUU U
  ||  ||  ||| |||||||||| |||       |||||| ||  |||     |||||| C
  AA  UG  UAG GUUUUAUCUA UGU       UAUAGU AC  AUG     GUCAAA A
AC  GU  UU   U          A   -----UU      A  CA   ----U      A
Stem-loop sequence UUUGAUGUUUCAAAAUAGAUAAUGUUUUCAUAUAUUAAUGUACUUUUUCAGUUUAUCAAAAACUGUGUAACCAAUGAUAUUUUGUAAUCUAUUUUGUGAUUUGUUGAACA