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BaseInfo

ncRNA ID novel_bna_miR1039
Species Brassica napus
Class miRNA
Genome position ChrC9:11873754-11873882 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363496
Length 24
Mature sequence(if miRNA) 106 - UUUCCGAGGACUUGUUUUGUCGGU - 129
Stem-loop(if miRNA) --       C   U A         ---U       -  -AA   G       A   U   G     A
  CGACAAA UAG G UCCUCGGAA    UUCCUCG AA   UUU UUUCCUC GAA UCC UCGGA A
  ||||||| ||| | |||||||||    ||||||| ||   ||| ||||||| ||| ||| |||||
  GCUGUUU GUU C AGGAGCCUU    AAGGAGC UU   GAA AAAGGAG CUU AGG AGCCU A
UG       U   - -         UAUU       C  AAA   G       C   U   G     U
Stem-loop sequence CGACAAACUAGUGAUCCUCGGAAUUUCCUCGAAAAUUUGUUUCCUCAGAAUUCCGUCGGAAAAUUCCGAGGGAUUUCCGAGGAAAGAAGAAAUUCCGAGGAAUUAUUUCCGAGGACUUGUUUUGUCGGU