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BaseInfo

ncRNA ID	ath-miRf10649-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CACCAUCUUCGUUGCUCUCU - NA
Stem-loop(if miRNA)	GG     -A          UG     UG  UG A  G GG    A     GAGG GGU  UGAGC  CCAUCUUCGU  CUCUC  GC  G GA U  UGAU UUGGC    U |||  |||||  ||||||||||  |||||  ||  | || |  |||| ||||| CCG  GCUCG  GGUAGAGGCA  GAGAG  UG  U CU A  GCUG AAUCG    A    -A     GC          GU     --  GU -  G GA    -     GAGU
Stem-loop sequence	GGUGGUGAGCACCAUCUUCGUUGCUCUCUGGCUGGAGAGUGGUGAUAUUGGCGAGGUAUGAGGCUAAGUCGAGAGUCUUGGUGAGAGUGACGGAGAUGGCGGCUCGAGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_102169.3	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   |||||||||||||||||||| targets:444   AGAGAGCAACGAAGAUGGUG   463 Target Full Sequence	0.0	Arabidopsis thaliana Plant invertase/pectin methylesterase inhibitor superfamily protein mRNA	Plant invertase/pectin methylesterase inhibitor superfamily protein(AT1G23205)	coding protein	psRNATarget
AK222111.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   |||||||||||||||||||| targets:318   AGAGAGCAACGAAGAUGGUG   337 Target Full Sequence	0.0	Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-91-J22	NA	coding protein	psRNATarget
BX818718.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   |||||||||||||||||||| targets:296   AGAGAGCAACGAAGAUGGUG   315 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL94ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT025267.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   |||||||||||||||||||| targets:276   AGAGAGCAACGAAGAUGGUG   295 Target Full Sequence	0.0	Arabidopsis thaliana At1g23205 mRNA, complete cds	NA	coding protein	psRNATarget
NM_106747.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   ||||=|*||||||||||||| targets:153   AGAGGGAAACGAAGAUGGUG   172 Target Full Sequence	2.0	Arabidopsis thaliana XH domain-containing protein partial mRNA	XH domain-containing protein(AT1G80990)	coding protein	psRNATarget
NM_001343723.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:633   GGAGAGCAACGAAGAUGGGA   652 Target Full Sequence	2.5	Arabidopsis thaliana NAC domain containing protein 89 (NAC089), mRNA	NAC domain containing protein 89(NAC089)	coding protein	psRNATarget
NM_122134.4	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:562   GGAGAGCAACGAAGAUGGGA   581 Target Full Sequence	2.5	Arabidopsis thaliana NAC domain containing protein 89 (NAC089), mRNA	NAC domain containing protein 89(NAC089)	coding protein	psRNATarget
AF385685.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:400   GGAGAGCAACGAAGAUGGGA   419 Target Full Sequence	2.5	Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds	NA	coding protein	psRNATarget
BX834031.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:390   GGAGAGCAACGAAGAUGGGA   409 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZC03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BX830937.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:390   GGAGAGCAACGAAGAUGGGA   409 Target Full Sequence	2.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS40ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
AY078006.1	ncRNA:20   UCUCUCGUUGCUUCUACCAC   1   =|||||||||||||||||** targets:284   GGAGAGCAACGAAGAUGGGA   303 Target Full Sequence	2.5	Arabidopsis thaliana AT5g22290/MWD9_7 mRNA, complete cds	NA	coding protein	psRNATarget