Search result

BaseInfo

ncRNA ID novel_bna_miR1027
Species Brassica napus
Class miRNA
Genome position ChrC8:12901822-12901869 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495;SRR2015555
Length 24
Mature sequence(if miRNA) 25 - AGUGGAAAAUAGAGUAGGGUUGGA - 48
Stem-loop(if miRNA) --    G                 
  AGUG AAAAUAGAGUAGGGUUGG
  |||| |||||||||||||||||A
  UCAC UUUUAUCUCAUUUUAACA
UU    -                 
Stem-loop sequence AGUGGAAAAUAGAGUAGGGUUGGAACAAUUUUACUCUAUUUUCACUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013831353.1
ncRNA:24   AGGUUGGGAUGAGAUAAAAGGUGA   1
  |===*||=|*=|||||||||||||
targets:161   UUUGUCCUUUUUCUAUUUUCCACU   184

3.0 PREDICTED: Brassica napus histidine kinase 2 (LOC106390821), transcript variant X2, mRNA histidine kinase 2(LOC106390821) coding protein psRNATarget