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BaseInfo

ncRNA ID	novel_bna_miR1018
Species	Brassica napus
Class	miRNA
Genome position	ChrA6:17843562-17843767 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538253
Length	24
Mature sequence(if miRNA)	183 - AAACUGUAUAACUAGGUUAUAAUC - 206
Stem-loop(if miRNA)	--AA    -               A C              CU    A   AU               A   CA                       A     CU     ACUG UAUAACUAGGUUAUA U UUACUAAGUUGUAU  UUUG CAA  GUACAACUUGGUAAA CUA  ACCUAGUUAUACAGUUUUACCAA UUAUA  A     |||| ||||||||||||||| | ||||||||||||||  |||| |||  ||||||||||||||| |||  ||||||||||||||||||||||| |||||     UGAC AUAUUGAUCCAAUAU A AAUGGUUCAACAUG  AAAC GUU  CAUGUUGAACCAUUU GAU  UGGAUCAAUAUGUCAAAAUGGUU AAUGU  C GUUC    C               C A              -U    A   -C               -   AG                       C     UU
Stem-loop sequence	AAACUGUAUAACUAGGUUAUAAUCUUACUAAGUUGUAUCUUUUGACAAAUGUACAACUUGGUAAAACUACAACCUAGUUAUACAGUUUUACCAAAUUAUACUACUUUGUAACUUGGUAAAACUGUAUAACUAGGUGAUAGUUUACCAAGUUGUACCUUGACAAAUGUACAACUUGGUAAAACUAUAACCUAGUUAUACCAGUCUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830510.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X1, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830511.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X2, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830512.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X3, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget