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BaseInfo

ncRNA ID	ath-miRf10647-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - CAGCUUCUUGAUACGUCCCA - NA
Stem-loop(if miRNA)	U  C             U   UCCC     ------A       ----CU  AAC           --C   UUUAGCAUCCGCACC  UC UGCAGCUUCUUGA ACG    AUGUA       UCUUGAU      UC   ACAGAGACUCA   UGC               A  || ||||||||||||| |||    |||||       |||||||      ||   |||||||||||   |||               G  AG ACGUCGGAGAACU UGU    UACGU       AGAACUA      AG   UGUCUUUGGGU   GGC               G A  A             C   --CU     GUUUUUA       CCUUCU  ACA           CCU   GAUGUCAUGCUACCA
Stem-loop sequence	UUCCUGCAGCUUCUUGAUACGUCCCAUGUAAUCUUGAUCUUCAACACAGAGACUCACUGCUUUAGCAUCCGCACCAGGACCAUCGUACUGUAGCGGUCCUGGGUUUCUGUACAGAUCUUCCAUCAAGAAUUUUUGUGCAUUCUGUCUCAAGAGGCUGCAAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX817935.1	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   |||||||||||||||||||| targets:173   UGGGACGUAUCAAGAAGCUG   192 Target Full Sequence	0.0	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL51ZF07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
BT008374.1	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   |||||||||||||||||||| targets:1694   UGGGACGUAUCAAGAAGCUG   1713 Target Full Sequence	0.0	Arabidopsis thaliana At1g20950 gene, complete cds	NA	coding protein	psRNATarget
AY059855.1	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   |||||||||||||||||||| targets:1776   UGGGACGUAUCAAGAAGCUG   1795 Target Full Sequence	0.0	Arabidopsis thaliana pyrophosphate-dependent phosphofructokinase alpha subunit (At1g20950; F9H16.6) mRNA, complete cds	NA	coding protein	psRNATarget
NM_101948.3	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   |||||||||||||||||||| targets:1991   UGGGACGUAUCAAGAAGCUG   2010 Target Full Sequence	0.0	Arabidopsis thaliana Phosphofructokinase family protein mRNA	Phosphofructokinase family protein(AT1G20950)	coding protein	psRNATarget
FJ708803.1	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   ||||||||*||||||||||* targets:854   UGGGACGUCUCAAGAAGCUU   873 Target Full Sequence	2.5	Arabidopsis thaliana leucine-rich repeat receptor-like protein kinase (LRR-RLK) mRNA, partial cds	NA	coding protein	psRNATarget
NM_001037003.2	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   ||||||||*||||||||||* targets:1081   UGGGACGUCUCAAGAAGCUU   1100 Target Full Sequence	2.5	Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein mRNA	Leucine-rich receptor-like protein kinase family protein(AT5G56040)	coding protein	psRNATarget
NM_124986.3	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   ||||||||*||||||||||* targets:1026   UGGGACGUCUCAAGAAGCUU   1045 Target Full Sequence	2.5	Arabidopsis thaliana Leucine-rich receptor-like protein kinase family protein mRNA	Leucine-rich receptor-like protein kinase family protein(AT5G56040)	coding protein	psRNATarget
AY072083.1	ncRNA:20   ACCCUGCAUAGUUCUUCGAC   1   ||||||||*||||||||||* targets:1026   UGGGACGUCUCAAGAAGCUU   1045 Target Full Sequence	2.5	Arabidopsis thaliana putative receptor protein kinase (At5g56040) mRNA, complete cds	NA	coding protein	psRNATarget