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BaseInfo

ncRNA ID	novel_bna_miR1012
Species	Brassica napus
Class	miRNA
Genome position	ChrA4:40023577-40023780 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538253
Length	24
Mature sequence(if miRNA)	1 - AAACUGUAUAACUAGGUUAUAAUC - 24
Stem-loop(if miRNA)	--AA    -               A C    G         -    A    U               A   CA                       A     CU     ACUG UAUAACUAGGUUAUA U UUAC AAGUUGUAC UUUG CAAA GUACAACUUGGUAAA CUA  ACCUAGUUAUACAGUUUUACCAA UUAUA  A     |||| ||||||||||||||| | |||| ||||||||| |||| |||| ||||||||||||||| |||  ||||||||||||||||||||||| |||||     UGAC AUAUUGAUCCAAUAU A AAUG UUCAACAUG AAAC GUUU CAUGUUGAACCAUUU GAU  UGGAUCAAUAUGUCAAAAUGGUU AAUGU  A GUUC    C               C A    G         U    A    -               -   AG                       C     UU
Stem-loop sequence	AAACUGUAUAACUAGGUUAUAAUCUUACGAAGUUGUACUUUGACAAAUGUACAACUUGGUAAAACUACAACCUAGUUAUACAGUUUUACCAAAUUAUACUAAUUUGUAACUUGGUAAAACUGUAUAACUAGGUGAUAGUUUACCAAGUUGUACUUUGACAAAUGUACAACUUGGUAAAACUAUAACCUAGUUAUACCAGUCUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830510.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X1, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830511.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X2, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830512.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X3, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget