Search result

BaseInfo

ncRNA ID	novel_bna_miR1010
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:20703797-20704002 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538253
Length	24
Mature sequence(if miRNA)	1 - AAACUGUAUAACUAGGUUAUAAUC - 24
Stem-loop(if miRNA)	--AA    -               A C              CU    A   AU  -             A   CA                       A     CU     ACUG UAUAACUAGGUUAUA U UUACUAAGUUGUAU  UUUG CAA  GG ACAACUUGGUAAA CUA  ACCUAGUUAUACAGUUUUACCAA UUAUA  A     |||| ||||||||||||||| | ||||||||||||||  |||| |||  || ||||||||||||| |||  ||||||||||||||||||||||| |||||     UGAC AUAUUGAUCCAAUAU A AAUGGUUCAACAUG  AAAC GUU  CC UGUUGAACCAUUU GAU  UGGAUCAAUAUGUCAAAAUGGUU AAUGU  C GUUC    C               C A              -U    A   --  A             -   AG                       C     UU
Stem-loop sequence	AAACUGUAUAACUAGGUUAUAAUCUUACUAAGUUGUAUCUUUUGACAAAUGGACAACUUGGUAAAACUACAACCUAGUUAUACAGUUUUACCAAAUUAUACUACUUUGUAACUUGGUAAAACUGUAUAACUAGGUGAUAGUUUACCAAGUUGUACCUUGACAAAUGUACAACUUGGUAAAACUAUAACCUAGUUAUACCAGUCUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830510.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X1, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830511.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X2, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830512.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X3, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget