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BaseInfo

ncRNA ID	novel_bna_miR1005
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:29463822-29464026 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538253
Length	24
Mature sequence(if miRNA)	182 - AAACUGUAUAACUAGGUUAUAAUC - 205
Stem-loop(if miRNA)	--                  A  A C              CU    A   AU               A   CA                       A     CU   AAACUGUAUAACUAGGUU UA U UUACUAAGUUGUAU  UUUG CAA  GUACAACUUGGUAAA CUA  ACCUAGUUAUACAGUUUUACCAA UUAUA  A   |||||||||||||||||| || | ||||||||||||||  |||| |||  ||||||||||||||| |||  ||||||||||||||||||||||| |||||   UUUGACAUAUUGAUCCAA AU A AAUGGUUCAACAUG  AAAC GUU  CAUGUUGAACCAUUU GAU  UGGAUCAAUAUGUCAAAAUGGUU AAUGU  C AU                  C  C A              -U    A   -C               -   AG                       C     UU
Stem-loop sequence	AAACUGUAUAACUAGGUUAUAAUCUUACUAAGUUGUAUCUUUUGACAAAUGUACAACUUGGUAAAACUACAACCUAGUUAUACAGUUUUACCAAAUUAUACUACUUUGUAACUUGGUAAAACUGUAUAACUAGGUGAUAGUUUACCAAGUUGUACCUUGACAAAUGUACAACUUGGUAAAACUACAACCUAGUUAUACAGUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013830510.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X1, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830511.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X2, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget
XM_013830512.1	ncRNA:24   CUAAUAUUGGAUCAAUAUGUCAAA   1   *=*|||*|||*||||||||||||| targets:283   AGCUAUCACCGAGUUAUACAGUUU   306 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106390119 (LOC106390119), transcript variant X3, mRNA	uncharacterized LOC106390119(LOC106390119)	coding protein	psRNATarget