Search result

BaseInfo

ncRNA ID novel_bna_miR983
Species Brassica napus
Class miRNA
Genome position ChrC7:5290067-5290120 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538225
Length 19
Mature sequence(if miRNA) 1 - CGUAGCUUGGUGGUAAAGA - 19
Stem-loop(if miRNA) --  U       -    AAA  A     A
  CG AGCUUGG UGGU   GA AGUAC G
  || ||||||| ||||   || |||||
  GC UUGGGCC ACCG   CU UCAUG C
GA  -       C    --C  G     U
Stem-loop sequence CGUAGCUUGGUGGUAAAGAAAGUACAGCUGUACUGUCCGCCACCCGGGUUCGAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013844781.1
ncRNA:19   AGAAAUGGUGGUUCGAUGC   1
  *||||||||||||||||||
targets:4   CCUUUACCACCAAGCUACG   22

1.0 PREDICTED: Brassica napus cytochrome P450 71B11-like (LOC106404012), transcript variant X2, mRNA cytochrome P450 71B11-like(LOC106404012) coding protein psRNATarget
XM_013844786.1
ncRNA:19   AGAAAUGGUGGUUCGAUGC   1
  *||||||||||||||||||
targets:38   CCUUUACCACCAAGCUACG   56

1.0 PREDICTED: Brassica napus cytochrome P450 71B11-like (LOC106404012), transcript variant X3, mRNA cytochrome P450 71B11-like(LOC106404012) coding protein psRNATarget