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BaseInfo

ncRNA ID	novel_bna_miR978
Species	Brassica napus
Class	miRNA
Genome position	ChrC5:18990062-18990132 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538225
Length	20
Mature sequence(if miRNA)	1 - ACGGUAUCUCUCCUACGUAG - 20
Stem-loop(if miRNA)	--U  C          G  C     -     --U  U    CG AGGAGAGAUA CG CAUCA CUUCU   CU A    || |||||||||| || ||||| |||||   ||    GC UCCUCUCUAU GC GUGGU GAAGA   GA A GAU  A          G  A     A     UUU  G
Stem-loop sequence	UCGCAGGAGAGAUAGCGCCAUCACUUCUUCUUAAGAGUUUAGAAGAUGGUGACGGUAUCUCUCCUACGUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013785864.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   =|||*||||||||||||||* targets:1932   UUACUUAGGAGAGAUACCGG   1951 Target Full Sequence	2.0	PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase At1g51880 (LOC106346507), transcript variant X3, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g51880(LOC106346507)	coding protein	psRNATarget
XM_013785862.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   =|||*||||||||||||||* targets:1997   UUACUUAGGAGAGAUACCGG   2016 Target Full Sequence	2.0	PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase At1g51880 (LOC106346507), transcript variant X1, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g51880(LOC106346507)	coding protein	psRNATarget
XM_013785863.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   =|||*||||||||||||||* targets:2003   UUACUUAGGAGAGAUACCGG   2022 Target Full Sequence	2.0	PREDICTED: Brassica napus probable LRR receptor-like serine/threonine-protein kinase At1g51880 (LOC106346507), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g51880(LOC106346507)	coding protein	psRNATarget
XM_013888178.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   **|||*|||||||||||||| targets:1866   AAACGGAGGAGAGAUACCGU   1885 Target Full Sequence	2.0	PREDICTED: Brassica napus histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like (LOC106446446), transcript variant X1, mRNA	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like(LOC106446446)	coding protein	psRNATarget
XM_013888176.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   **|||*|||||||||||||| targets:1866   AAACGGAGGAGAGAUACCGU   1885 Target Full Sequence	2.0	PREDICTED: Brassica napus histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like (LOC106446445), transcript variant X1, mRNA	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like(LOC106446445)	coding protein	psRNATarget
XM_013888179.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   **|||*|||||||||||||| targets:1866   AAACGGAGGAGAGAUACCGU   1885 Target Full Sequence	2.0	PREDICTED: Brassica napus histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like (LOC106446446), transcript variant X2, mRNA	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like(LOC106446446)	coding protein	psRNATarget
XM_013832887.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   **|||*|||||||||||||| targets:1924   GAACGGAGGAGAGAUACCGU   1943 Target Full Sequence	2.0	PREDICTED: Brassica napus histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like (LOC106392112), mRNA	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like(LOC106392112)	coding protein	psRNATarget
XM_013888177.1	ncRNA:20   GAUGCAUCCUCUCUAUGGCA   1   **|||*|||||||||||||| targets:1866   AAACGGAGGAGAGAUACCGU   1885 Target Full Sequence	2.0	PREDICTED: Brassica napus histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like (LOC106446445), transcript variant X2, mRNA	histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like(LOC106446445)	coding protein	psRNATarget