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BaseInfo

ncRNA ID novel_bna_miR970
Species Brassica napus
Class miRNA
Genome position ChrC5:2961087-2961173 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 1 - CUUGAGUUGGUAAAGAAGUGGAGG - 24
Stem-loop(if miRNA) --     G      -    AG    G     UUUCAA   -    
  CUUGA UUGGUA AAGA  UGGA GAUCA      AGU UUAUC
  ||||| |||||| ||||  |||| |||||      ||| ||||U
  GAAUU AAUUAU UUCU  ACCU CUAGU      UCA AAUAU
UU     A      G    --    A     UCCCCC   C    
Stem-loop sequence CUUGAGUUGGUAAAGAAGUGGAGGAUCAUUUCAAAGUUUAUCUUAUAACACUCCCCCUUGAUCAUCCAUCUUGUAUUAAAUUAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013889879.1
ncRNA:24   GGAGGUGAAGAAAUGGUUGAGUUC   1
  ==|===||||*||||||||||||*
targets:556   UUUUUGCUUCAUUACCAACUCAAA   579

3.0 PREDICTED: Brassica napus uncharacterized protein At2g34160-like (LOC106447926), mRNA uncharacterized protein At2g34160-like(LOC106447926) coding protein psRNATarget
XM_013791872.1
ncRNA:24   GGAGGUGAAGAAAUGGUUGAGUUC   1
  ==|===||||*||||||||||||*
targets:556   UUUUUGCUUCAUUACCAACUCAAA   579

3.0 PREDICTED: Brassica napus uncharacterized protein At2g34160-like (LOC106352201), mRNA uncharacterized protein At2g34160-like(LOC106352201) coding protein psRNATarget