Search result

BaseInfo

ncRNA ID	ath-miRf10642-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	20
Mature sequence(if miRNA)	NA - UUGUACAUCACUUUUAGUGU - NA
Stem-loop(if miRNA)	---   U    A UGGAUUGUACAUCACUUUUAGUGUACAAAUGUA   AAG GUAC C |||||||||||||||||||||||||||||||||   ||| |||| U AUCUAACAUGUAGUGAAAAUCACAUGUUUAUAU   UUU UAUG G                                  AUA   U    U
Stem-loop sequence	UGGAUUGUACAUCACUUUUAGUGUACAAAUGUAAAGUGUACACUGUGUAUUUUUAUAUAUAUUUGUACACUAAAAGUGAUGUACAAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BX813709.1	ncRNA:20   UGUGAUUUUCACUACAUGUU   1   ||||||||||||*||||||| targets:1804   ACACUAAAAGUGUUGUACAA   1823 Target Full Sequence	1.5	Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB35ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress)	NA	coding protein	psRNATarget
NM_001334229.1	ncRNA:20   UGUGAUUUUCACUACAUGUU   1   ||||||||||||*||||||| targets:2104   ACACUAAAAGUGUUGUACAA   2123 Target Full Sequence	1.5	Arabidopsis thaliana glutamate decarboxylase 2 (GAD2), partial mRNA	glutamate decarboxylase 2(GAD2)	coding protein	psRNATarget
BT029363.1	ncRNA:20   UGUGAUUUUCACUACAUGUU   1   ||||||=||||||||||||= targets:341   ACACUAGAAGUGAUGUACAG   360 Target Full Sequence	2.0	Arabidopsis thaliana At1g09030 mRNA, complete cds	NA	coding protein	psRNATarget
NM_100774.2	ncRNA:20   UGUGAUUUUCACUACAUGUU   1   ||||||=||||||||||||= targets:343   ACACUAGAAGUGAUGUACAG   362 Target Full Sequence	2.0	Arabidopsis thaliana nuclear factor Y, subunit B4 (NF-YB4), partial mRNA	nuclear factor Y, subunit B4(NF-YB4)	coding protein	psRNATarget
NM_117297.2	ncRNA:20   UGUGAUUUUCACUACAUGUU   1   ||||**=||||||||||||| targets:1094   ACACGUGAAGUGAUGUACAA   1113 Target Full Sequence	3.0	Arabidopsis thaliana Copper amine oxidase family protein partial mRNA	Copper amine oxidase family protein(AT4G12270)	coding protein	psRNATarget