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BaseInfo

ncRNA ID novel_bna_miR966
Species Brassica napus
Class miRNA
Genome position ChrC5:31031046-31031134 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 23
Mature sequence(if miRNA) 67 - UCUGAGAGUCUGGAACUGCAUCA - 89
Stem-loop(if miRNA) AGAG     AAC --G    AGAAGACGAUGGACCGGAAGAAGAUGU
    UCUGG   U   CAUC                           A
    |||||   |   ||||                           C
    CUACG   U   GGUC                           C
---A     --- CAA    UGAGAGUCUGAAGAAUCUCUACCAAGG
Stem-loop sequence AGAGUCUGGAACUGCAUCAGAAGACGAUGGACCGGAAGAAGAUGUACCGGAACCAUCUCUAAGAAGUCUGAGAGUCUGGAACUGCAUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013844292.1
ncRNA:23   ACUACGUCAAGGUCUGAGAGUCU   1
  ||=**||||||||||||||||*|
targets:142   UGGGACAGUUCCAGACUCUCACA   164

2.5 PREDICTED: Brassica napus predicted GPI-anchored protein 58 (LOC106403464), mRNA predicted GPI-anchored protein 58(LOC106403464) coding protein psRNATarget