Search result

BaseInfo

ncRNA ID	novel_bna_miR961
Species	Brassica napus
Class	miRNA
Genome position	ChrC5:30321641-30321710 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495;SRR2015555
Length	25
Mature sequence(if miRNA)	1 - AACUAAAAAAAACUAAGAACCGGUU - 25
Stem-loop(if miRNA)	--      AA           C     A          AACUAA  AAAACUAAGAA CGGUU UUAAAUAA   ||||||  ||||||||||| ||||| |||||||A   UUGAUU  UUUUGAUUCUU GCCGA AAUUUAUA AA      -C           C     A
Stem-loop sequence	AACUAAAAAAAACUAAGAACCGGUUAUUAAAUAAAAUAUUUAAAAGCCGCUUCUUAGUUUUCUUAGUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013884985.1	ncRNA:25   UUGGCCAAGAAUCAAAAAAAAUCAA   1   |=*||*||||||||||||*|||||| targets:2   AGACGUUUCUUAGUUUUUCUUAGUU   26 Target Full Sequence	1.5	PREDICTED: Brassica napus putative lipid-binding protein AIR1 (LOC106443416), mRNA	putative lipid-binding protein AIR1(LOC106443416)	coding protein	psRNATarget
XM_013813202.1	ncRNA:25   UUGGCCAAGAAUCAAAAAAAAUCAA   1   |=|=--|||||*||||||||||||* targets:675   AGCU--UUCUUUGUUUUUUUUAGUC   697 Target Full Sequence	2.0	PREDICTED: Brassica napus 60S ribosomal protein L17-2-like (LOC106372951), mRNA	60S ribosomal protein L17-2-like(LOC106372951)	coding protein	psRNATarget