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BaseInfo

ncRNA ID	novel_bna_miR960
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:5060412-5060494 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538151
Length	24
Mature sequence(if miRNA)	1 - AUGCCUGGCUCCCUGUAUGCCAUC - 24
Stem-loop(if miRNA)	--    C       CU         C U UA  C          AUGC UGGCUCC  GUAUGCCAU C C  AG UCAUCGAC   |||| |||||||  ||||||||| | |  || |||||||C   UACG ACCGAGG  UAUGCGGUA G G  UC AGUAGUUA UA    U       AG         A U CC  C
Stem-loop sequence	AUGCCUGGCUCCCUGUAUGCCAUCCUCUAAGCUCAUCGACCAUUGAUGACCUCCGUGAAUGGCGUAUGAGGAGCCAUGCAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013793213.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |*||||||=||||||||||||||| targets:1311   GCUGGCAUGCAGGGAGCCAGGCAU   1334 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106353451), mRNA	auxin response factor 17-like(LOC106353451)	coding protein	psRNATarget
XM_013809033.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |*||||||=||||||||||||||| targets:1322   GCUGGCAUGCAGGGAGCCAGGCAU   1345 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106368952), mRNA	auxin response factor 17-like(LOC106368952)	coding protein	psRNATarget
XM_013878072.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |*||||||=||||||||||||||| targets:1360   GCUGGCAUGCAGGGAGCCAGGCAU   1383 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 18-like (LOC106437151), mRNA	auxin response factor 18-like(LOC106437151)	coding protein	psRNATarget
XM_013840650.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**|||||=||||||||||||||| targets:317   GCCGGCAUGCAGGGAGCCAGGCAU   340 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400269), transcript variant X1, mRNA	auxin response factor 17-like(LOC106400269)	coding protein	psRNATarget
XM_013840662.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**|||||=||||||||||||||| targets:1365   GCCGGCAUGCAGGGAGCCAGGCAU   1388 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106400284), mRNA	auxin response factor 17-like(LOC106400284)	coding protein	psRNATarget
XM_013794565.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**|||||*||||||||||||||| targets:1379   GCCGGCAUCCAGGGAGCCAGGCAU   1402 Target Full Sequence	1.0	PREDICTED: Brassica napus auxin response factor 17-like (LOC106354590), mRNA	auxin response factor 17-like(LOC106354590)	coding protein	psRNATarget
XM_013830883.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||=*||||||||||||||||| targets:222   GUGGGUUUACAGGGAGCCAGGCAU   245 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390396), mRNA	auxin response factor 16-like(LOC106390396)	coding protein	psRNATarget
XM_013884453.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||=*||||||||||||||||| targets:1504   GUGGGUUUACAGGGAGCCAGGCAU   1527 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106442809), mRNA	auxin response factor 16-like(LOC106442809)	coding protein	psRNATarget
XM_013830782.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||=*||||||||||||||||| targets:1488   GUGGGUUUACAGGGAGCCAGGCAU   1511 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106390311), mRNA	auxin response factor 16-like(LOC106390311)	coding protein	psRNATarget
XM_013892562.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||=*||||||||||||||||| targets:1522   GUGGGUUUACAGGGAGCCAGGCAU   1545 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16-like (LOC106450799), mRNA	auxin response factor 16-like(LOC106450799)	coding protein	psRNATarget
XM_013852053.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||=*||||||||||||||||| targets:1495   GUGGGUUUACAGGGAGCCAGGCAU   1518 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 16 (LOC106411312), mRNA	auxin response factor 16(LOC106411312)	coding protein	psRNATarget
XM_013836968.1	ncRNA:24   CUACCGUAUGUCCCUCGGUCCGUA   1   |**||*|||||||||||||||||* targets:1527   GCAGGAAUACAGGGAGCCAGGCAA   1550 Target Full Sequence	2.0	PREDICTED: Brassica napus auxin response factor 10 (LOC106396551), mRNA	auxin response factor 10(LOC106396551)	coding protein	psRNATarget