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BaseInfo

ncRNA ID novel_bna_miR950
Species Brassica napus
Class miRNA
Genome position ChrC6:16837191-16837364 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR538151
Length 19
Mature sequence(if miRNA) 1 - UUUGGAUUGAAGGGAGCUC - 19
Stem-loop(if miRNA) --       A         C      -UU    ------      AGA      G  A  C    A UC     -    CU       AUU
  GCUCCUU UAGUUCAAA GAGAGU   AGCA      GGGUAA   AAAGCU CU AG UAUG A  CCAUA AGCC  AAUCCUU   U
  ||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   A
  CGAGGGA GUUAGGUUU UUCUCA   UCGU      CCCGUU   UUUCGA GA UC AUAC U  GGUAU UUGG  UUAGGAA   U
CU       A         C      UUU    UAAUUU      CAA      G  C  U    A UC     A    -U       AAA
Stem-loop sequence GCUCCUUAUAGUUCAAACGAGAGUUUAGCAGGGUAAAGAAAAGCUGCUAAGCUAUGAAUCCCAUAAGCCCUAAUCCUUAUUUAUAAAAAGGAUUUGGUUAUAUGGCUUACAUAUCUCAGGAGCUUUAACUUGCCCUUUAAUUGCUUUUACUCUUCUUUGGAUUGAAGGGAGCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013859253.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  |||||||||||||*|||||
targets:1111   GAGCUCCCUUCAAACCAAA   1129

1.5 PREDICTED: Brassica napus transcription factor MYB28-like (LOC106418525), mRNA transcription factor MYB28-like(LOC106418525) coding protein psRNATarget
XM_013809665.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  |||=|||||||||*|||||
targets:742   GAGUUCCCUUCAAACCAAA   760

2.5 PREDICTED: Brassica napus hybrid signal transduction histidine kinase A-like (LOC106369519), mRNA hybrid signal transduction histidine kinase A-like(LOC106369519) coding protein psRNATarget
XM_013868384.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  |||||=|||||||*|||||
targets:886   GAGCUUCCUUCAAACCAAA   904

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106427664), mRNA transcription factor GAMYB-like(LOC106427664) coding protein psRNATarget
XM_013809700.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  |||=|||||||||*|||||
targets:1093   GAGUUCCCUUCAAACCAAA   1111

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106369561), mRNA transcription factor MYB26-like(LOC106369561) coding protein psRNATarget
XM_013849472.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  |||=|||||||||*|||||
targets:1165   GAGUUCCCUUCAAACCAAA   1183

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106408769), mRNA transcription factor MYB26-like(LOC106408769) coding protein psRNATarget
XM_013790193.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *|||||||*||||||||||
targets:278   AAGCUCCCCUCAAUCCAAA   296

2.5 PREDICTED: Brassica napus actin-1-like (LOC106350285), mRNA actin-1-like(LOC106350285) coding protein psRNATarget
XM_013847653.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *|||||||*||||||||||
targets:326   AAGCUCCCCUCAAUCCAAA   344

2.5 PREDICTED: Brassica napus actin-12-like (LOC106406909), mRNA actin-12-like(LOC106406909) coding protein psRNATarget
KR076552.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:877   GAGCUCCCUUCAUUCCAAU   895

2.5 Brassica napus MYB transcription factor 81-2 (MYB81-2.1) mRNA, complete cds NA coding protein psRNATarget
XM_013787297.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *|||||||*||||||||||
targets:494   AAGCUCCCCUCAAUCCAAA   512

2.5 PREDICTED: Brassica napus actin-12 (LOC106347709), mRNA actin-12(LOC106347709) coding protein psRNATarget
XM_013876648.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:979   GAGCUCCCUUCAUUCCAAU   997

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876646.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1095   GAGCUCCCUUCAUUCCAAU   1113

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013879558.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1025   GAGCUCCCUUCAUUCCAAU   1043

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X3, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013863608.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1055   GAGCUCCCUUCAUUCCAAU   1073

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876651.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1103   GAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X6, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013863607.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1075   GAGCUCCCUUCAUUCCAAU   1093

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X3, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876650.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1103   GAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876649.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1103   GAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X4, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013876645.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1103   GAGCUCCCUUCAUUCCAAU   1121

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106435733), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106435733) coding protein psRNATarget
XM_013894677.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1117   GAGCUCCCUUCAUUCCAAU   1135

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X2, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013879555.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1268   GAGCUCCCUUCAUUCCAAU   1286

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X1, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013828451.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1346   GAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388394), mRNA transcription factor MYB104-like(LOC106388394) coding protein psRNATarget
XM_013828453.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1346   GAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106388396), mRNA transcription factor MYB104-like(LOC106388396) coding protein psRNATarget
XM_013879650.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1346   GAGCUCCCUUCAUUCCAAU   1364

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438484), mRNA transcription factor MYB104-like(LOC106438484) coding protein psRNATarget
XM_013879557.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1480   GAGCUCCCUUCAUUCCAAU   1498

2.5 PREDICTED: Brassica napus transcription factor MYB104-like (LOC106438414), transcript variant X2, mRNA transcription factor MYB104-like(LOC106438414) coding protein psRNATarget
XM_013894678.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1570   GAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X3, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013894676.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1570   GAGCUCCCUUCAUUCCAAU   1588

2.5 PREDICTED: Brassica napus transcription factor GAMYB (LOC106452529), transcript variant X1, mRNA transcription factor GAMYB(LOC106452529) coding protein psRNATarget
XM_013863605.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1647   GAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X1, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863606.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1647   GAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X2, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013863609.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||||||||||*|||||*
targets:1647   GAGCUCCCUUCAUUCCAAU   1665

2.5 PREDICTED: Brassica napus transcription factor GAMYB-like (LOC106422808), transcript variant X5, mRNA transcription factor GAMYB-like(LOC106422808) coding protein psRNATarget
XM_013876422.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||*||||||||*|||||
targets:491   GAGCCCCCUUCAAACCAAA   509

2.5 PREDICTED: Brassica napus uncharacterized LOC106435524 (LOC106435524), partial mRNA uncharacterized LOC106435524(LOC106435524) coding protein psRNATarget
XM_013825691.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||*||||||||*|||||
targets:629   GAGCCCCCUUCAAACCAAA   647

2.5 PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X2, mRNA uncharacterized LOC106385789(LOC106385789) coding protein psRNATarget
XM_013825690.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||*||||||||*|||||
targets:629   GAGCCCCCUUCAAACCAAA   647

2.5 PREDICTED: Brassica napus uncharacterized LOC106385789 (LOC106385789), transcript variant X1, mRNA uncharacterized LOC106385789(LOC106385789) coding protein psRNATarget
XM_013885042.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||||*||||||||*|||||
targets:662   GAGCCCCCUUCAAACCAAA   680

2.5 PREDICTED: Brassica napus uncharacterized LOC106443481 (LOC106443481), mRNA uncharacterized LOC106443481(LOC106443481) coding protein psRNATarget
XM_013791371.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||*|||||
targets:1141   GACCUCCCUUCAAACCAAA   1159

2.5 PREDICTED: Brassica napus transcription factor MYB26-like (LOC106351590), mRNA transcription factor MYB26-like(LOC106351590) coding protein psRNATarget
XM_013790894.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  ||*||||||||||*|||||
targets:1150   GACCUCCCUUCAAACCAAA   1168

2.5 PREDICTED: Brassica napus myb-like protein A (LOC106351074), mRNA myb-like protein A(LOC106351074) coding protein psRNATarget
XM_013823447.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *||||=||||||||||||*
targets:1623   CAGCUUCCUUCAAUCCAAC   1641

3.0 PREDICTED: Brassica napus uncharacterized LOC106383332 (LOC106383332), mRNA uncharacterized LOC106383332(LOC106383332) coding protein psRNATarget
XM_013819110.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *||||=||||||||||||*
targets:2577   UAGCUUCCUUCAAUCCAAC   2595

3.0 PREDICTED: Brassica napus uncharacterized LOC106379093 (LOC106379093), mRNA uncharacterized LOC106379093(LOC106379093) coding protein psRNATarget
XM_013844780.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *||||=||||||||||||*
targets:2577   UAGCUUCCUUCAAUCCAAC   2595

3.0 PREDICTED: Brassica napus uncharacterized LOC106404017 (LOC106404017), mRNA uncharacterized LOC106404017(LOC106404017) coding protein psRNATarget
XM_013819109.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *||||=||||||||||||*
targets:2703   CAGCUUCCUUCAAUCCAAC   2721

3.0 PREDICTED: Brassica napus uncharacterized LOC106379092 (LOC106379092), mRNA uncharacterized LOC106379092(LOC106379092) coding protein psRNATarget
XM_013816148.1
ncRNA:19   CUCGAGGGAAGUUAGGUUU   1
  *|*||=|||||||||||||
targets:89   CAACUUCCUUCAAUCCAAA   107

3.0 PREDICTED: Brassica napus uncharacterized LOC106376070 (LOC106376070), mRNA uncharacterized LOC106376070(BNAA01G06260D) coding protein psRNATarget
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