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BaseInfo

ncRNA ID	novel_bna_miR945
Species	Brassica napus
Class	miRNA
Genome position	ChrC5:26574622-26574799 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR1363495
Length	24
Mature sequence(if miRNA)	1 - AAAAGCGAUGUAACUACGACACAG - 24
Stem-loop(if miRNA)	--                                                                              -UUA    A   AAAAGCGAUGUAACUACGACACAGAUAUUUAACGUGGUUCACCCCUAGGGCUACGUCCACGGGCAAAGAGAGAUCUUA    UUGC C   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||| U   UUUUCGCUACAUUGAUGCUGUGUUUAUAAAUUGCACCAAGUGGGGAUCCCGAUGCAGGUGCCCGUUUCUCUCUAGAAU    AAUG C UA                                                                              UUCA    U
Stem-loop sequence	AAAAGCGAUGUAACUACGACACAGAUAUUUAACGUGGUUCACCCCUAGGGCUACGUCCACGGGCAAAGAGAGAUCUUAUUAUUGCACUCUGUAAACUUUAAGAUCUCUCUUUGCCCGUGGACGUAGCCCUAGGGGUGAACCACGUUAAAUAUUUGUGUCGUAGUUACAUCGCUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013821838.1	ncRNA:24   GACACAGCAUCAAUGUAGCGAAAA   1   |||||||||*|||||||||=|||| targets:11   CUGUGUCGUUGUUACAUCGUUUUU   34 Target Full Sequence	2.5	PREDICTED: Brassica napus protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like (LOC106381896), mRNA	protein VARIATION IN COMPOUND TRIGGERED ROOT growth response-like(LOC106381896)	coding protein	psRNATarget
XM_013882185.1	ncRNA:24   GACACAGCAUCAAUGUAGCGAAAA   1   ***|||=|||||||||||*||||| targets:1403   AAAUGUUGUAGUUACAUCUCUUUU   1426 Target Full Sequence	2.5	PREDICTED: Brassica napus membrane metalloprotease ARASP, chloroplastic-like (LOC106440495), mRNA	membrane metalloprotease ARASP, chloroplastic-like(LOC106440495)	coding protein	psRNATarget
XM_013882186.1	ncRNA:24   GACACAGCAUCAAUGUAGCGAAAA   1   ***|||=|||||||||||*||||| targets:1376   AAAUGUUGUAGUUACAUCUCUUUU   1399 Target Full Sequence	2.5	PREDICTED: Brassica napus membrane metalloprotease ARASP, chloroplastic (LOC106440496), mRNA	membrane metalloprotease ARASP, chloroplastic(LOC106440496)	coding protein	psRNATarget
XM_013893239.1	ncRNA:24   GACACAGCAUCAAUGUAGCGAAAA   1   ***|||=|||||||||||*||||| targets:1373   AAAUGUUGUAGUUACAUCUCUUUU   1396 Target Full Sequence	2.5	PREDICTED: Brassica napus membrane metalloprotease ARASP, chloroplastic (LOC106451320), mRNA	membrane metalloprotease ARASP, chloroplastic(LOC106451320)	coding protein	psRNATarget