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BaseInfo

ncRNA ID	novel_bna_miR942
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:32464069-32464267 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR538151
Length	21
Mature sequence(if miRNA)	179 - AAGGCUUUAUAUUUUCAUCGG - 199
Stem-loop(if miRNA)	--       C   C     C    A         U     AU  UCCG   G  C    -          C      C     ---   CUUCGACCAGUUC   GGUGAAA UAU AAGCC UUUC CCGCCGGAG GUACC  UC    UUC CU CAGU GCAACCACCA AAACUC GACCA   GAA             A   ||||||| ||| ||||| |||| ||||||||| |||||  ||    ||| || |||| |||||||||| |||||| |||||   |||   CUACUUU AUA UUCGG AAAG GGCGGUCUU UAUGG  AG    AAG GA GUCA CGUUGGUGGU UUUGAG CUGGU   GGU             A GG       U   U     -    G         C     CU  UUAG   A  A    G          C      A     CAC   GUUUGAGACCUUC
Stem-loop sequence	GGUGAAACUAUCAAGCCCUUUCACCGCCGGAGUGUACCAUUCUCCGUUCGCUCCAGUGCAACCACCACAAACUCCGACCAGAACUUCGACCAGUUCAACUUCCAGAGUUUGUGGCACUGGUCAGAGUUUCUGGUGGUUGCGACUGAAGAGAAGAUUGAUCGGUAUCUUCUGGCGGGGAAAGGCUUUAUAUUUUCAUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013896744.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:968   AUGAUGAAAUUAUAAAGCCUU   988 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454634 (LOC106454634), transcript variant X2, mRNA	uncharacterized LOC106454634(LOC106454634)	coding protein	psRNATarget
XM_013896743.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:974   AUGAUGAAAUUAUAAAGCCUU   994 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454634 (LOC106454634), transcript variant X1, mRNA	uncharacterized LOC106454634(LOC106454634)	coding protein	psRNATarget
XM_013896742.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:1018   AUGAUGAAAUUAUAAAGCCUU   1038 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454633 (LOC106454633), mRNA	uncharacterized LOC106454633(LOC106454633)	coding protein	psRNATarget
XM_013896746.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=*|||||||||||||||||* targets:1246   GUAAUGAAAAUAUAAAGCCUC   1266 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106454635 (LOC106454635), transcript variant X2, mRNA	uncharacterized LOC106454635(LOC106454635)	coding protein	psRNATarget
XM_013896745.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=*|||||||||||||||||* targets:1252   GUAAUGAAAAUAUAAAGCCUC   1272 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106454635 (LOC106454635), transcript variant X1, mRNA	uncharacterized LOC106454635(LOC106454635)	coding protein	psRNATarget